View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3264_low_2 (Length: 329)
Name: NF3264_low_2
Description: NF3264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3264_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 170 - 313
Target Start/End: Complemental strand, 21073686 - 21073543
Alignment:
| Q |
170 |
cactggttctgatgattttctggatttggatttgatatttggttctgatgatttcctagatgtggagttggttactgcatctgttgatttcttcgatgaa |
269 |
Q |
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| T |
21073686 |
cactggttctgatgattttctggatttggatttgatatttggttttgatgatttcctagatgtggagttggttactgcatctgttgatttcttcgatgaa |
21073587 |
T |
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| Q |
270 |
gattttgttcggtggtgatgacggcgatgctggtggcattcgtg |
313 |
Q |
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| T |
21073586 |
gattttgttcggtggtgatgacggcgatactggtggcattcgtg |
21073543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 10 - 174
Target Start/End: Complemental strand, 21073974 - 21073810
Alignment:
| Q |
10 |
catcatcatatcttataaaactctgaaaattagcaacttcaaaatcttaagtaaaacttaattggactttaatctcccaggtatcannnnnnnnaatcca |
109 |
Q |
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| T |
21073974 |
catcatcatatcttataaaactcataaaattagcaacgttaagatcttaaataaaacttaattggactttaatctcccaagtatcattttttttaatcca |
21073875 |
T |
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| Q |
110 |
accgtcctctttctaatgcaacaaaataaacatgtgcattaaatggacttttcactgagacactg |
174 |
Q |
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| T |
21073874 |
accatcctctttctaatgcaacaaaataaacatgtgcattaaatggacttttcactgagacactg |
21073810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 170 - 304
Target Start/End: Complemental strand, 41569401 - 41569267
Alignment:
| Q |
170 |
cactggttctgatgattttctggatttggatttgatatttggttctgatgatttcctagatgtggagttggttactgcatctgttgatttcttcgatgaa |
269 |
Q |
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||||||||| |||||||||||||| ||||||||||||| |||||| ||||| |||||||||||||| ||||| |||| ||||||||||||||| || || |
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| T |
41569401 |
cactggttcagatgattttctggacttggatttgatatctggttccgatgacttcctagatgtggatttggtgactggatctgttgatttcttggacgac |
41569302 |
T |
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| Q |
270 |
gattttgttcggtggtgatgacggcgatgctggtg |
304 |
Q |
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| T |
41569301 |
gcttctgttcggtggtgatgacggcggtgctggtg |
41569267 |
T |
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