View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3265_high_18 (Length: 253)
Name: NF3265_high_18
Description: NF3265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3265_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 42974555 - 42974315
Alignment:
| Q |
1 |
ccacacatcacaaggtaacgtaaacaaatttctcgccctaccacacgcaaactgcacaaccctaaccctacacgtgaacgacggatacaaaaccacacca |
100 |
Q |
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| T |
42974555 |
ccacacatcacaaggtaacgtaaacaaatttctctcccttccacacgcaaactgcacaaccctaaccctacacgtgaacgacggatacaaaaccacacca |
42974456 |
T |
|
| Q |
101 |
tttattttcatcaccaacgctataactccatcacccatcatctccctgtaagcaccgtttgtccacgtcactctcccgtaaccgtccgatataaatcctg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42974455 |
tttattttcatcaccaacgctataactccatcacccatcatctccctgtaagcaccgtttgtccacgtcactctcccgtaaccgtccgatataaaccctg |
42974356 |
T |
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| Q |
201 |
gacacgtgtccaccatcagctttgcacttctctcttcatct |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
42974355 |
gacacgtgtccaccatcagctttgcacttctctcttcatct |
42974315 |
T |
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Back To:
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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 34059256 - 34059207
Alignment:
| Q |
162 |
tccacgtcactctcccgtaaccgtccgatataaatcctggacacgtgtcc |
211 |
Q |
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| T |
34059256 |
tccacgtcactctcccataaccgtccgatataaatccaggacacgcgtcc |
34059207 |
T |
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