View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3265_high_2 (Length: 817)
Name: NF3265_high_2
Description: NF3265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3265_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 788; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 788; E-Value: 0
Query Start/End: Original strand, 1 - 812
Target Start/End: Complemental strand, 49631291 - 49630480
Alignment:
| Q |
1 |
gtcctagcagccttctccctcacctgattcattttcatcttctgtgcataacttgaaccgtttctaattgttgcaccaacctgctttagcctattctcct |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49631291 |
gtcctagcagccttctccctcacctgattcgttttcatcttctgtgcataacttgaaccgtttctaattgttgcaccaacctgctttagcctattctcct |
49631192 |
T |
|
| Q |
101 |
gctgcaaactaagtgctgtatttgcctacaaccattatcatagaaagataaattgagtttaacatttataaactgaggatataattaatagagcttttaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49631191 |
gctgcaaactaagtgctgtatttgcctacaaccattatcatagaaagataaattgagtttaacatttataaactgaggatataattaatagagcttttaa |
49631092 |
T |
|
| Q |
201 |
gtaacctgtaaaaactctgctcctggttcaagttcagaacttcggcttgcgaccatttgagaatcagacttgtaaatgtttctagccactgaaaagcttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49631091 |
gtaacctgtaaaaactctgctcctggttcaagttcagaacttcggcttgcgaccatatgagaatcagacttgtaaatgtttctagccactgaaaagcttt |
49630992 |
T |
|
| Q |
301 |
tcagaatgagttttcgcttctgctccagttcctcatttagctttgtggactttgggatcagtattgagctgctgagttttttctcatacgcaatcacagc |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49630991 |
tcagaatgagttttcgcttctgctccagttcctcatttagctttgtggactttgggatcagtattgagctgctgagttttttctcatacgcaatcacagc |
49630892 |
T |
|
| Q |
401 |
cttcgcaaattcctatttcacaacaaccaacaaaaatccataatttgtattccttttatcaattttacatgcattgcaaaaagtgtaggaacacaatgta |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49630891 |
cttcgcaaattcctatttcacaacaaccaacaaaaatccataatttgtattccttttatcaattttacatgcattgcaaaaagtgtaggaacacaatgta |
49630792 |
T |
|
| Q |
501 |
tacctgataggccatactgcatccaggataatcaaattcatcactgtcttggttcctcattctctctggatgaaattgaaggcccataataaactttccc |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49630791 |
tacctgataggccatactgcatccaggataatcaaattcatcactgtcttggttcctcattctctctggatgaaattgaaggcccataataaactttccc |
49630692 |
T |
|
| Q |
601 |
tcttcaggattgtaattatttggatcgtaaaatccttcaaccaaaccatctggagcaaatgccattggaacaaatctctctgcaagtctcttaacaccct |
700 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49630691 |
tcttcaggattgtaattatttggattgtaaaatccttcaaccaaaccatctggagcaaatgccattggaacaaatctctctgcaagtctcttaacaccct |
49630592 |
T |
|
| Q |
701 |
gatggtggtaactattcaccgtgatctgcattttgtcatctacaaaagagtccttaaaccaatcatgcaaaggggtgttcgccattacatatatcgaatg |
800 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
49630591 |
gatggtggtaactattcaccatgatctgcattttgtcatctacaaaagagtccttaaaccaatcatgcaaaggggtgtttgccattacatatatcgaatg |
49630492 |
T |
|
| Q |
801 |
atgatgtccatc |
812 |
Q |
| |
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| |||||||||| |
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|
| T |
49630491 |
acgatgtccatc |
49630480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 553 - 773
Target Start/End: Original strand, 31651745 - 31651965
Alignment:
| Q |
553 |
ttcctcattctctctggatgaaattgaaggcccataataaactttccctcttcaggattgtaattatttggatcgtaaaatccttcaaccaaaccatctg |
652 |
Q |
| |
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|||||||| | ||| |||||||| || | |||||||||||||| |||||||| ||||| ||| || || || ||||| ||||||| ||||||||| | |
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| T |
31651745 |
ttcctcatccgctcgggatgaaactgcaatcccataataaacttaccctcttctggattataagcatcagggtcataaaacccttcaatcaaaccatcag |
31651844 |
T |
|
| Q |
653 |
gagcaaatgccattggaacaaatctctctgcaagtctcttaacaccctgatggtggtaactattcaccgtgatctgcattttgtcatctacaaaagagtc |
752 |
Q |
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||||||| |||||||||||||| | || |||||||||||||||||| ||||| || || ||||| ||| || | |||||| |||||| | ||||| || |
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| T |
31651845 |
gagcaaaagccattggaacaaaacgctgtgcaagtctcttaacaccttgatgatgatagctattaaccaaaatgtccattttatcatcttccaaagaatc |
31651944 |
T |
|
| Q |
753 |
cttaaaccaatcatgcaaagg |
773 |
Q |
| |
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||||||||||| ||||||||| |
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| T |
31651945 |
cttaaaccaatgatgcaaagg |
31651965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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