View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3265_high_7 (Length: 416)
Name: NF3265_high_7
Description: NF3265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3265_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 2143143 - 2143542
Alignment:
| Q |
1 |
cttatcactatgaaactagaacttgcaccaccacgaaaccattgcgcgttacgaagaggccaggagacaggacaaaccagatctaaaaacgaaattgata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2143143 |
cttatcactatgaaactagaacttgcaccaccacgaaaccattgcgcattacgaagaggccaggagacaggacaaaccagatctaaaaacgaaattgata |
2143242 |
T |
|
| Q |
101 |
cataaaaccgaagcggatatgaataagccttgcttttaagaaatattttcacatctttatttcttccaaatcttaatgggagccccgtccccaattttaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2143243 |
cataaaaccgaagcggatatgaataagccttacttttaagaaatattttcacatctttatttcttccaaatcttaatgggaaccccgtccccaattttaa |
2143342 |
T |
|
| Q |
201 |
gggttcgtcaatggtcctctctaaatgaccttccagagcaggtattaaacaaaaattgtttcatgaccccacac-nnnnnnnnnntcgtttttaaagtgc |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2143343 |
gggttcgtcaatggtcctctctaaatgaccttccatagcaggtataaaacaaaaattgtttcatgaccccacacaacaaaaaaaatcgtttttaaagtgc |
2143442 |
T |
|
| Q |
300 |
agtcacaaagattacttatgtgcccctccatatagaaccaaagtatctaggtacaaactcatttcaactagattccttcttctttttctaaagtatatat |
399 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2143443 |
agtcacaaagattacttatgcgcccctccatatagaaccaaagtatctaggtacaaaatcatttcagctagattccttcttctttttctaaagtatatat |
2143542 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 187 - 393
Target Start/End: Complemental strand, 30935547 - 30935341
Alignment:
| Q |
187 |
gtccccaattttaagggttcgtcaatggtcctctctaaatgaccttccagagcaggtattaaacaaaaattgtttcatgaccccacacnnnnnnnnnn-t |
285 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| | |||||| ||||||||||||| ||||| | | |
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| T |
30935547 |
gtccccaattttaagggttcatcaatggtcctctctaaatgaccttccatagcaggtttaaaacaagaattgtttcatgatcccacccaacaaaaaaaat |
30935448 |
T |
|
| Q |
286 |
cgtttttaaagtgcagtcacaaagattacttatgtgcccctccatatagaaccaaagtatctaggtacaaactcatttcaactagattccttcttctttt |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||| ||| |||||||| ||||||||||||||||||| |
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| T |
30935447 |
cgtttttaaagtgcagtcacaaagattacttatgcgcccctccatataaaacc-aagtatctaggtagaaaatcatttcagctagattccttcttctttt |
30935349 |
T |
|
| Q |
386 |
tctaaagt |
393 |
Q |
| |
|
|||||||| |
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|
| T |
30935348 |
tctaaagt |
30935341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 3e-55; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 187 - 393
Target Start/End: Complemental strand, 32186367 - 32186161
Alignment:
| Q |
187 |
gtccccaattttaagggttcgtcaatggtcctctctaaatgaccttccagagcaggtattaaacaaaaattgtttcatgaccccacacnnnnnnnnnn-t |
285 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| | |||||| ||||||||||||| ||||| | | |
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|
| T |
32186367 |
gtccccaattttaagggttcatcaatggtcctctctaaatgaccttccatagcaggtttaaaacaagaattgtttcatgatcccacccaacaaaaaaaat |
32186268 |
T |
|
| Q |
286 |
cgtttttaaagtgcagtcacaaagattacttatgtgcccctccatatagaaccaaagtatctaggtacaaactcatttcaactagattccttcttctttt |
385 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||| ||| |||||||| ||||||||||||||||||| |
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|
| T |
32186267 |
catttttaaagtgcagtcacaaagattacttatgcgcccctccatataaaacc-aagtatctaggtagaaaatcatttcagctagattccttcttctttt |
32186169 |
T |
|
| Q |
386 |
tctaaagt |
393 |
Q |
| |
|
|||||||| |
|
|
| T |
32186168 |
tctaaagt |
32186161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 187 - 356
Target Start/End: Complemental strand, 31677336 - 31677164
Alignment:
| Q |
187 |
gtccccaattttaagggttcgtcaatggtcctctctaaatgaccttccagagcaggtattaaacaaaaattgtttcatgaccccacac---nnnnnnnnn |
283 |
Q |
| |
|
|||||||||||||||| ||| |||||||| |||||||||||||||| || ||||||| | |||||||||||||||||||||||||||| |
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|
| T |
31677336 |
gtccccaattttaaggattcatcaatggttctctctaaatgacctttcatagcaggtttaaaacaaaaattgtttcatgaccccacacaatatttttttt |
31677237 |
T |
|
| Q |
284 |
ntcgtttttaaagtgcagtcacaaagattacttatgtgcccctccatatagaaccaaagtatctaggtacaaa |
356 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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|
| T |
31677236 |
tttttttttaaagtgcagtcacaaagattacttatgtgcccctccatataacaccaaagtatccaggtacaaa |
31677164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 302 - 364
Target Start/End: Original strand, 622610 - 622672
Alignment:
| Q |
302 |
tcacaaagattacttatgtgcccctccatatagaaccaaagtatctaggtacaaactcatttc |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
622610 |
tcacaaagattacttatgtgcccctccatataacaccaaagtatctaggtacaaaatcatttc |
622672 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 187 - 263
Target Start/End: Original strand, 622536 - 622612
Alignment:
| Q |
187 |
gtccccaattttaagggttcgtcaatggtcctctctaaatgaccttccagagcaggtattaaacaaaaattgtttca |
263 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||| ||||| || |||| | ||||||||||||||||| |
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|
| T |
622536 |
gtccccaattttaagggttcatcaatggtcctctccaaatgacattccatagaaggtttaaaacaaaaattgtttca |
622612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 187 - 393
Target Start/End: Complemental strand, 7663790 - 7663584
Alignment:
| Q |
187 |
gtccccaattttaagggttcgtcaatggtcctctctaaatgaccttccagagcaggtattaaacaaaaattgtttcatgaccccacacnnnnnnnnnn-t |
285 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||| | |||||| ||||||||||||||||||| | | |
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|
| T |
7663790 |
gtccccaattttaagggttcatcaatgatcctctctaaatgaccttccatagcaggtttaaaacaagaattgtttcatgaccccacccaacaaaaaaaat |
7663691 |
T |
|
| Q |
286 |
cgtttttaaagtgcagtcacaaagattacttatgtgcccctccatatagaaccaaagtatctaggtacaaactcatttcaactagattccttcttctttt |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| ||||| |||| ||||||||||||| ||| |||||| | ||||||||||||||||||| |
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|
| T |
7663690 |
cgtttttaaagtgcagtcacaaagattacttatgcacccctctatataaaacc-aagtatctaggtagaaaatcatttgagctagattccttcttctttt |
7663592 |
T |
|
| Q |
386 |
tctaaagt |
393 |
Q |
| |
|
|||||||| |
|
|
| T |
7663591 |
tctaaagt |
7663584 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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