View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3265_low_1 (Length: 1466)
Name: NF3265_low_1
Description: NF3265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3265_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 462; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 19 - 492
Target Start/End: Original strand, 3730223 - 3730696
Alignment:
| Q |
19 |
aaaaactcacattcttgatatctccaagactatcttcaagccaatcaattttttgtaatgctaacctacatgacaagcttgttctagcccttgttgtttc |
118 |
Q |
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| T |
3730223 |
aaaaactcacattcttgatatctccaagactagcttcaagccaatcaattttttgtaatgctaacctacatgacaagcttgttctagcccttgttgtttc |
3730322 |
T |
|
| Q |
119 |
ctcaagtgccaaactcatacttagatcatctttgttttgcatttcaacctgcatttaactatgtttaagcaacgatccctacataataaggacataggta |
218 |
Q |
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| T |
3730323 |
ctcaagtgccaaactcatacttagatcatctttgttttgcatttcaacctgcatttaactatgtttaagcaacgatccctacataataaggacataggta |
3730422 |
T |
|
| Q |
219 |
caaatacaacaatgataatggtttgttaccgttttggacatcaatgatccttctgaaatcacattgttgtgttcgcacgcaccatccatctcttccgttg |
318 |
Q |
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| T |
3730423 |
caaatacaacaatgataatggtttgttaccgttttggacatcaatgatccttctgaaaccacattgttgtgttcgcacgcaccatccatctcttccgttg |
3730522 |
T |
|
| Q |
319 |
tctgcatgaataattttacatccttgtcggttatttctaccggaaaagctactaatcatgaaaggtttgttcacaaatagctaacgaatttgtgtttaat |
418 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3730523 |
tctgcatgaataattttacatacttgtcggttatttctaccggaaaagctactaatcatgaaaggtttgttcacaaatagctaacgaatttgtgtttaat |
3730622 |
T |
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| Q |
419 |
caaccaaatttgttcttggccgaaaacatggtagttgaatggctctaatttatgaaactctcaattatgtgcac |
492 |
Q |
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| T |
3730623 |
caaccaaatttgttcttggccgaaaacatggtagttgaatggctctaatttatgaaactctcaattatgtgcac |
3730696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 532 - 1030
Target Start/End: Original strand, 3730696 - 3731196
Alignment:
| Q |
532 |
cattttcatgtttctacaagacaattaaaaatacaaaaagctagttttgttgaaagagtttaaaatgtc--tcttgatattgacaaacctgaatcatttc |
629 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3730696 |
cattttcatgtttctacaagacaattaaaaatacaaaaagctagttttgttgaaagagtttaaaatgtcgttcttgatattgacaaacctgaatcatttc |
3730795 |
T |
|
| Q |
630 |
taacaattctgaatttttccaggggccttcatcactcatcaagcaacctccatattcagaacatgtgcaattaccacccaaaaatgttggcaagttactg |
729 |
Q |
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| T |
3730796 |
taacaattctgaatttttccaggggccttgatcactcatcaagcaacctccatattcagaacatgtgcaattaccacccaaaaatgttggcaagttactg |
3730895 |
T |
|
| Q |
730 |
aaaaattgaacaattagatctaagagtttcattaaacgcagaacatcacaaatagacctaattgtaagtagtaacatattcatcnnnnnnnggcttcaac |
829 |
Q |
| |
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| T |
3730896 |
aaaaattgaacaattagatctaagagtttcattaaacgcagaacatcacaaatagacctaattgtaagtagtaacatattcatcaaaaaaaggcttcaac |
3730995 |
T |
|
| Q |
830 |
ttcctaagttgcctgttgctacagaaaaaatcatggcttaactatacaaaagtcgttttacctcggatcaatagcgtctagcaacacactgagataatta |
929 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3730996 |
ttcctaagttgcctgttgctacagaaaaaatcatggcttaactatacaaaagtcgttttacctcggatcaatagcctctagcaacacactgagataatta |
3731095 |
T |
|
| Q |
930 |
gaacccaaaacctgaaaaaggaatgttggagatttaacataaacacaaaactgtaaaatagaggttgatacaacaaaatatagtaatagttgtataaaat |
1029 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3731096 |
gaacccaaaacctgaaaaaggaatgttggagatttaacataaacacaaaactgtaagatagaggttgatacaacaaaatatagtaatagttgtataaaat |
3731195 |
T |
|
| Q |
1030 |
c |
1030 |
Q |
| |
|
| |
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| T |
3731196 |
c |
3731196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1069 - 1456
Target Start/End: Original strand, 3731194 - 3731577
Alignment:
| Q |
1069 |
atccgtacttgaatttttgctactgtgcgttcacttaggaatgccttcactgctttccacaacatcttaaagccagaaccagcattaataataaagagtt |
1168 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3731194 |
atccgtacttgaatttttgctactgtgcgttcacttaggaatgccttcactgctttccacaacatcttaaagccagaaccagcattaataataaagagtt |
3731293 |
T |
|
| Q |
1169 |
tatttagagtctgcnnnnnnnnnnnnntagatgaactttaatcaacttcaatagggaaactactacaataaaaatttaagaattcgtctttaacttttta |
1268 |
Q |
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| T |
3731294 |
tatttagagtctgcaaaaaaaaaaa--tagatgaactttaatcaacttcaatagggaaactactacaataaaaatttaagaattcgtctttaacttttta |
3731391 |
T |
|
| Q |
1269 |
tgttattattgttgtaaactttgaaaactatataaccattgtcatattatcaaataatctaacttaatcacacattaaaatagcagtcatgtcacatata |
1368 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
3731392 |
tgttattattgttgtaaactttgaaaactatataaccattgtcatattatcaaataatctaacttaatcacacatt--aatagcattcatgtcacatata |
3731489 |
T |
|
| Q |
1369 |
tccaaatcatctgctcatgagctatgatcaacaaaaagtacctcaggataataactgctatcaatcttctgaatttccatgatgatgt |
1456 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3731490 |
tccaaatcatctgctcatgagctatgatcaacaaaaagtacctcaggataataactgctatcaatcttctgaatttccatgaagatgt |
3731577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 1e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 1e-35
Query Start/End: Original strand, 1365 - 1450
Target Start/End: Original strand, 11683800 - 11683885
Alignment:
| Q |
1365 |
tatatccaaatcatctgctcatgagctatgatcaacaaaaagtacctcaggataataactgctatcaatcttctgaatttccatga |
1450 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
11683800 |
tataaccaaatcatctgctcatgagctatgatcaacaaaaagtacctcaggataataattgctatcaatcttctgaatttccatga |
11683885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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