View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3265_low_11 (Length: 339)
Name: NF3265_low_11
Description: NF3265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3265_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 42 - 179
Target Start/End: Original strand, 30542046 - 30542183
Alignment:
| Q |
42 |
ttcatttcatattcaaccaaactctaacgtacgtacatagatgtcataaatttgcattagaatcattatatatattgattgacatgcatagggtcgatca |
141 |
Q |
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| T |
30542046 |
ttcatttcatattcaaccaaactctaacgtacgtacatagatgtcataaatttgcattagaatcattatatatattgattgacatgcatagggtcgatca |
30542145 |
T |
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| Q |
142 |
agaaaggccactagcgtagttatatcgtcaactaagac |
179 |
Q |
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| T |
30542146 |
agaaaggccactagcgtagttatatcgtcaactaagac |
30542183 |
T |
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Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 226 - 329
Target Start/End: Original strand, 30542229 - 30542332
Alignment:
| Q |
226 |
gtactactaactcttcttgaccaaacacaaattaaaatggtaaccatcacatgattcacatgcttatataccataatacaaacctaaagcttcctattat |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30542229 |
gtactactaactcttcttgaccaaacacaaattaaaatggtaaccatcacatgattcacatgcttatataccataatacaaacctaaagcttcccattat |
30542328 |
T |
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| Q |
326 |
tcat |
329 |
Q |
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|||| |
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| T |
30542329 |
tcat |
30542332 |
T |
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