View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3265_low_12 (Length: 338)
Name: NF3265_low_12
Description: NF3265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3265_low_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 39605378 - 39605051
Alignment:
| Q |
1 |
ttgaagcttttaccattcatatcttttgtcccacgagtttctattctgattataaaaataggctccatcagttctaagaactctccaacatttggtaata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39605378 |
ttgaagcttttaccattcatatcttttgtcccacgagtttctattctgattataaaaatagactccatcagttctaagaactctccaacatttggtaata |
39605279 |
T |
|
| Q |
101 |
cataaatcttcatccttcttagcatcataaattactacgttctttgtcacactgtcccatttaaggacgcacgaatacaaagtggtgccacgaatgttgg |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39605278 |
cacaaatcttcatccttcttagcatcataaattactacgttctttgtcacactgtcccatttaaggacgcacgaatacaaagtggtgccacgaatgttgg |
39605179 |
T |
|
| Q |
201 |
cacgaaaagaccattctgtaatttcaccttgataaagatcatggctgccaagatcatcgtcttttgatttacaatgcacatcaacaacagtgcccatatc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39605178 |
cacgaaaagaccattctgtaatttcaccttgataaagatcatggctgccaagatcatcgtcttttgatttacaatgcacatcaacaacagtgcccatatc |
39605079 |
T |
|
| Q |
301 |
atttgaaatacgtactgttgtctctgtg |
328 |
Q |
| |
|
||||||||||||||||||||||| |||| |
|
|
| T |
39605078 |
atttgaaatacgtactgttgtctttgtg |
39605051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 8 - 287
Target Start/End: Complemental strand, 39611093 - 39610814
Alignment:
| Q |
8 |
ttttaccattcatatcttttgtcccacgagtttctattctgattataaaaataggctccatcagttctaagaactctccaacatttggtaatacataaat |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||| |
|
|
| T |
39611093 |
ttttaccattcatatcttttgtcccacgagtttttattctgattataaaaataggctccatcacttttaagaactctccaacatttggtaatacacaaat |
39610994 |
T |
|
| Q |
108 |
cttcatccttcttagcatcataaattactacgttctttgtcacactgtcccatttaaggacgcacgaatacaaagtggtgccacgaatgttggcacgaaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
39610993 |
cttcatccttcttagcatcataaattactacgttctttgtcacactgtcccatttaaggacgcacgaatacaaagtggtgccacgaatgttagcaagaaa |
39610894 |
T |
|
| Q |
208 |
agaccattctgtaatttcaccttgataaagatcatggctgccaagatcatcgtcttttgatttacaatgcacatcaacaa |
287 |
Q |
| |
|
|||||||||||||||| |||| | |||||||| | || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39610893 |
agaccattctgtaattgcaccattataaagataacggtcgccaagatcatcgtcttttgatttacaatgcacatcaacaa |
39610814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University