View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3265_low_15 (Length: 312)
Name: NF3265_low_15
Description: NF3265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3265_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 13 - 296
Target Start/End: Complemental strand, 5631688 - 5631404
Alignment:
| Q |
13 |
gagaggttaaggtgtacttgaggaggttcagcatctgttacatcaaaataacttgtaagtacaagatattatgcaagatattttaattgcaaccaaaata |
112 |
Q |
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| T |
5631688 |
gagaggttaaggtgtacttgaggaggttcagcatctgttacatcaaaataagttgtaagtacaagatattatgcaagatattttaattgcaaccaaaata |
5631589 |
T |
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| Q |
113 |
acttgtaacattcaaagaacataattactaacaaattctaactcaagatttatagtgtctcaataacttaaatataa-caacaagcctcataacttttac |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5631588 |
acttgtaacattcaaagaacataattactaacaaattctaactcaagatttatagtgtctcaataacttaaatataaccaacaagcctcataacttttac |
5631489 |
T |
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| Q |
212 |
aactagcccaaattgttaatgtttacccttttaatttatgatataccaggatactttatgtggaagtatgaataagctaaggtac |
296 |
Q |
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| T |
5631488 |
aactagcccaaattgttaatgtttacccttttaatttatgatataccaggatactttatgtggaagtatgaataagctaaggtac |
5631404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 5996737 - 5996783
Alignment:
| Q |
13 |
gagaggttaaggtgtacttgaggaggttcagcatctgttacatcaaaa |
60 |
Q |
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| T |
5996737 |
gagaggttaaggtgtacttgaggaggttcagcatctg-tacatcaaaa |
5996783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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