View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3265_low_23 (Length: 236)
Name: NF3265_low_23
Description: NF3265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3265_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 42974543 - 42974769
Alignment:
| Q |
1 |
ttgtgatgtgtggagaatggattgtggtgggtttgcatggagattagatgttaaagctgctcttagcttgagattaggttgctaaattagctacctagta |
100 |
Q |
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| T |
42974543 |
ttgtgatgtgtggagaatggattgtggtgggtttgcatggagattagatgttaaagctgctcttagcttgagattaggttgctaaattagctacctagta |
42974642 |
T |
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| Q |
101 |
cttagcttaactcatattataatctttttccaaa------ggtatcggtatcactccttgattagatcatgatattgcagaatgctaataatatctttat |
194 |
Q |
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| T |
42974643 |
cttagcttaactcatattataatctttttccaaaggtatcggtatcggtatcactccttgattagatcatgatattgcagaatgctaataatatctttat |
42974742 |
T |
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| Q |
195 |
cttttgaaggaggaaaatggaaatttt |
221 |
Q |
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| T |
42974743 |
cttttgaaggaggaaaatggaaatttt |
42974769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 8059465 - 8059530
Alignment:
| Q |
1 |
ttgtgatgtgtggagaatggattgtggtgggtttgcatggagattagatgttaaagctgctcttag |
66 |
Q |
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| T |
8059465 |
ttgtgatgtttggagattagagtgtggtgggtttgcatggaggttagatgttaaagctgctcttag |
8059530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 34059385 - 34059447
Alignment:
| Q |
2 |
tgtgatgtgtggagaatggattgtggtgggtttgcatggagattagatgttaaagctgctctt |
64 |
Q |
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| T |
34059385 |
tgtgatgcgtggagattggactgtggtggttttgcatggagattagatgttactgctgctctt |
34059447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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