View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3265_low_25 (Length: 228)

Name: NF3265_low_25
Description: NF3265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3265_low_25
NF3265_low_25
[»] chr3 (1 HSPs)
chr3 (17-216)||(8523077-8523276)
[»] chr5 (9 HSPs)
chr5 (20-216)||(42128857-42129053)
chr5 (20-197)||(42117736-42117913)
chr5 (20-215)||(34240469-34240664)
chr5 (20-216)||(34232725-34232924)
chr5 (20-216)||(42123472-42123668)
chr5 (43-118)||(41572040-41572115)
chr5 (43-118)||(41617679-41617754)
chr5 (34-88)||(41713612-41713666)
chr5 (141-206)||(41444445-41444510)
[»] chr2 (3 HSPs)
chr2 (20-216)||(12248434-12248630)
chr2 (20-216)||(11994299-11994495)
chr2 (138-212)||(32681840-32681914)
[»] chr4 (1 HSPs)
chr4 (20-216)||(11118117-11118313)
[»] chr6 (2 HSPs)
chr6 (20-216)||(25522954-25523150)
chr6 (138-216)||(24140921-24140999)


Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 8523077 - 8523276
Alignment:
Q  17 tcatcatggcttcaaactttttgaaataggcttttggtagaggaccactaaagttattgcttgagatatcaaaaatagttaaatctggaaatggatgctt 116  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8523077 tcatcatggcttcaaactttttgaaataggattttggtagaggaccactaaagttattgtttgagatatcaaaaatagttaaatctggaaatggatgctt 8523176  T
Q  117 gagctttggattaacaatgataccatgcaacttattgtctcgcaaaagcaacactttcaaatattgcaaggtttgaagccaatgaggaaaattgtcttct 216  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||||||||||||||||||||    
T  8523177 gatctttggattaacaatgataccatgcaacttattgtctcgcaaaagcaacactttcaaataatgcagtgtttcaagccaatgaggaaaattgtcttct 8523276  T

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Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 42128857 - 42129053
Alignment:
Q  20 tcatggcttcaaactttttgaaataggcttttggtagaggaccactaaagttattgcttgagatatcaaaaatagttaaatctggaaatggatgcttgag 119  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||| |||||||||||||||| |||||  |||||||||||||||||     
T  42128857 tcatggcttcaaactttttaaaataggcttttggtagcggaccgctaaagttattgcctgagatatcaaaaataattaaacttggaaatggatgcttgat 42128956  T
Q  120 ctttggattaacaatgataccatgcaacttattgtctcgcaaaagcaacactttcaaatattgcaaggtttgaagccaatgaggaaaattgtcttct 216  Q
    |||| ||||| ||||||||||||||||||| |||||| |||||| ||||||||||||||||||||  ||||||||||||| ||||||||||||||||    
T  42128957 ctttagattagcaatgataccatgcaacttgttgtcttgcaaaaccaacactttcaaatattgcagtgtttgaagccaatcaggaaaattgtcttct 42129053  T

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Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 197
Target Start/End: Original strand, 42117736 - 42117913
Alignment:
Q  20 tcatggcttcaaactttttgaaataggcttttggtagaggaccactaaagttattgcttgagatatcaaaaatagttaaatctggaaatggatgcttgag 119  Q
    ||||||||||||| ||||| ||| | ||||||||||| ||||  ||||||||||| | |||||||| ||||||| |||||  |||||||||||||||||     
T  42117736 tcatggcttcaaatttttttaaaaatgcttttggtagcggacagctaaagttatttcctgagatataaaaaataattaaacttggaaatggatgcttgat 42117835  T
Q  120 ctttggattaacaatgataccatgcaacttattgtctcgcaaaagcaacactttcaaatattgcaaggtttgaagcca 197  Q
    ||||||||||  ||||||||||||||||||||||||| | |||| |||||||| ||||||||| |  |||||||||||    
T  42117836 ctttggattaggaatgataccatgcaacttattgtcttgtaaaaccaacacttgcaaatattgtagtgtttgaagcca 42117913  T

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Target: chr5; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 34240664 - 34240469
Alignment:
Q  20 tcatggcttcaaactttttgaaataggcttttggtagaggaccactaaagttattgcttgagatatcaaaaatagttaaatctggaaatggatgcttgag 119  Q
    ||||||||||||| | ||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||  ||||   |||||||||||| |||     
T  34240664 tcatggcttcaaaatattttaaataggcttttggtagcggaccagtaaagttattgcttgagatatcaaaaataactaaactaggaaatggatgcctgat 34240565  T
Q  120 ctttggattaacaatgataccatgcaacttattgtctcgcaaaagcaacactttcaaatattgcaaggtttgaagccaatgaggaaaattgtcttc 215  Q
    ||||  |||  |||||  |||||||||||||||||||||||||| || ||||||||| ||||| |  |||||||||||   |||||| ||||||||    
T  34240564 ctttaaattggcaatgtgaccatgcaacttattgtctcgcaaaaccagcactttcaagtattggagagtttgaagccagacaggaaatttgtcttc 34240469  T

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Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 34232924 - 34232725
Alignment:
Q  20 tcatggcttcaaactttttgaaataggcttt---tggtagaggaccactaaagttattgcttgagatatcaaaaatagttaaatctggaaatggatgctt 116  Q
    ||||||||||| |||||||||||||| ||||   |||||| ||||||||||||||||| |  |||||||||||||||  ||||   |||||||||| |||    
T  34232924 tcatggcttcatactttttgaaatagtctttcggtggtagcggaccactaaagttatttcccgagatatcaaaaataactaaactgggaaatggattctt 34232825  T
Q  117 gagctttggattaacaatgataccatgcaacttattgtctcgcaaaagcaacactttcaaatattgcaaggtttgaagccaatgaggaaaattgtcttct 216  Q
    || ||||  |||  |||||  ||||||||||||||| ||||| ||||  | ||||||||||| |||||| ||||||| ||| | |||||| |||||||||    
T  34232824 gatctttaaattggcaatgtgaccatgcaacttattatctcgtaaaactagcactttcaaatcttgcaaagtttgaatccagtcaggaaatttgtcttct 34232725  T

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Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 42123472 - 42123668
Alignment:
Q  20 tcatggcttcaaactttttgaaataggcttttggtagaggaccactaaagttattgcttgagatatcaaaaatagttaaatctggaaatggatgcttgag 119  Q
    ||||||||||| | |||||  |||||||||||||||||  ||||| ||||||||| |  ||||||||||||||  ||||   ||||||| || |||  |     
T  42123472 tcatggcttcataattttttgaataggcttttggtagaaaaccaccaaagttatttccagagatatcaaaaatgattaagcttggaaatagacgctcaat 42123571  T
Q  120 ctttggattaacaatgataccatgcaacttattgtctcgcaaaagcaacactttcaaatattgcaaggtttgaagccaatgaggaaaattgtcttct 216  Q
    ||||  |||  | |||  |||||| ||||||||||||||||||| ||  |||||||||| ||| |  ||||||| ||||| ||||||||||||||||    
T  42123572 ctttaaattggcgatgggaccatgaaacttattgtctcgcaaaaccagtactttcaaatcttgaagtgtttgaaaccaatcaggaaaattgtcttct 42123668  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 118
Target Start/End: Complemental strand, 41572115 - 41572040
Alignment:
Q  43 taggcttttggtagaggaccactaaagttattgcttgagatatcaaaaatagttaaatctggaaatggatgcttga 118  Q
    |||||||||||||| || ||||| |||||||||  ||| |||||||||||| |||||   ||||||||||||||||    
T  41572115 taggcttttggtagtgggccactgaagttattggatgaaatatcaaaaataattaaactaggaaatggatgcttga 41572040  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 118
Target Start/End: Complemental strand, 41617754 - 41617679
Alignment:
Q  43 taggcttttggtagaggaccactaaagttattgcttgagatatcaaaaatagttaaatctggaaatggatgcttga 118  Q
    |||||||||||||| || ||||| |||||||||  ||| |||||||||||| |||||   ||||||||||||||||    
T  41617754 taggcttttggtagtgggccactgaagttattggatgaaatatcaaaaataattaaactaggaaatggatgcttga 41617679  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 41713666 - 41713612
Alignment:
Q  34 tttttgaaataggcttttggtagaggaccactaaagttattgcttgagatatcaa 88  Q
    ||||| ||||||||||||||||| |||||||| |||| |||||  ||||||||||    
T  41713666 ttttttaaataggcttttggtagcggaccactgaagtcattgcccgagatatcaa 41713612  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 206
Target Start/End: Original strand, 41444445 - 41444510
Alignment:
Q  141 atgcaacttattgtctcgcaaaagcaacactttcaaatattgcaaggtttgaagccaatgaggaaa 206  Q
    ||||||||||||| ||||||||| ||  |||||||||| |  ||| |||||||||||||| |||||    
T  41444445 atgcaacttattggctcgcaaaaccagtactttcaaatgtgacaaagtttgaagccaatggggaaa 41444510  T

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Target: chr2 (Bit Score: 113; Significance: 2e-57; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 12248434 - 12248630
Alignment:
Q  20 tcatggcttcaaactttttgaaataggcttttggtagaggaccactaaagttattgcttgagatatcaaaaatagttaaatctggaaatggatgcttgag 119  Q
    ||||||||||||||||||  |||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||       
T  12248434 tcatggcttcaaacttttcaaaataggcatttggtagcggaccactaaagttattgcctgagatatcaaaaatagttaaacttggaaatggatgctttgt 12248533  T
Q  120 ctttggattaacaatgataccatgcaacttattgtctcgcaaaagcaacactttcaaatattgcaaggtttgaagccaatgaggaaaattgtcttct 216  Q
     ||| ||||||||||||||||||||||||||||||||||||  ||||| |||||||||| |||||  ||||||||||||| |||||| | |||||||    
T  12248534 atttagattaacaatgataccatgcaacttattgtctcgcagcagcaaaactttcaaatcttgcagtgtttgaagccaatcaggaaactcgtcttct 12248630  T

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Target: chr2; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 11994495 - 11994299
Alignment:
Q  20 tcatggcttcaaactttttgaaataggcttttggtagaggaccactaaagttattgcttgagatatcaaaaatagttaaatctggaaatggatgcttgag 119  Q
    ||||||||||||||||||  |||||||| |||||||| ||||||||||||||||||| | ||||||||||||||||||||  |||||||||||||||       
T  11994495 tcatggcttcaaacttttcaaaataggcatttggtagcggaccactaaagttattgccttagatatcaaaaatagttaaacttggaaatggatgctttgt 11994396  T
Q  120 ctttggattaacaatgataccatgcaacttattgtctcgcaaaagcaacactttcaaatattgcaaggtttgaagccaatgaggaaaattgtcttct 216  Q
     ||| |||||||||||||| |||||||||||||||||||||  ||||| |||||||||| |||||  ||||||||||||| |||||| | |||||||    
T  11994395 atttagattaacaatgatatcatgcaacttattgtctcgcagcagcaaaactttcaaatcttgcagtgtttgaagccaatcaggaaactcgtcttct 11994299  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 212
Target Start/End: Complemental strand, 32681914 - 32681840
Alignment:
Q  138 accatgcaacttattgtctcgcaaaagcaacactttcaaatattgcaaggtttgaagccaatgaggaaaattgtc 212  Q
    |||||||||||| ||||| ||||||| ||| |||||||||| |||||  || ||||||||||  || ||||||||    
T  32681914 accatgcaacttgttgtcacgcaaaaccaatactttcaaatcttgcattgtatgaagccaatatgggaaattgtc 32681840  T

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Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 11118117 - 11118313
Alignment:
Q  20 tcatggcttcaaactttttgaaataggcttttggtagaggaccactaaagttattgcttgagatatcaaaaatagttaaatctggaaatggatgcttgag 119  Q
    |||| |||||| | ||||| ||||||||||||||||||  |||||||||| | ||||  ||||||||||||||  ||||   ||||||| |||||| ||     
T  11118117 tcatagcttcatagttttttaaataggcttttggtagaaaaccactaaagctgttgcccgagatatcaaaaatgattaagcttggaaatagatgctcgat 11118216  T
Q  120 ctttggattaacaatgataccatgcaacttattgtctcgcaaaagcaacactttcaaatattgcaaggtttgaagccaatgaggaaaattgtcttct 216  Q
    ||||  |||  |||||  |||||||||||||||||||||||||| ||| |||||||||| | |||| ||||||||||||| ||||||| ||||||||    
T  11118217 ctttaaattttcaatgggaccatgcaacttattgtctcgcaaaaccaatactttcaaatctggcaatgtttgaagccaatcaggaaaactgtcttct 11118313  T

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Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 25523150 - 25522954
Alignment:
Q  20 tcatggcttcaaactttttgaaataggcttttggtagaggaccactaaagttattgcttgagatatcaaaaatagttaaatctggaaatggatgcttgag 119  Q
    ||||||||||| | ||| | ||||||||||||||||||  |||||  || || || | |||||||||||||||  |||||  | |||||| ||||||||     
T  25523150 tcatggcttcataatttcttaaataggcttttggtagaaaaccacctaaattgttacctgagatatcaaaaatgattaaactttgaaatgaatgcttgat 25523051  T
Q  120 ctttggattaacaatgataccatgcaacttattgtctcgcaaaagcaacactttcaaatattgcaaggtttgaagccaatgaggaaaattgtcttct 216  Q
     |||  ||| |||| |  |||||||||||| ||||||||||||| ||||||||||||||  ||||  |||||||||||||  |||||||||||||||    
T  25523050 ttttaaattgacaagggaaccatgcaacttgttgtctcgcaaaaccaacactttcaaatcctgcattgtttgaagccaatccggaaaattgtcttct 25522954  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 216
Target Start/End: Original strand, 24140921 - 24140999
Alignment:
Q  138 accatgcaacttattgtctcgcaaaagcaacactttcaaatattgcaaggtttgaagccaatgaggaaaattgtcttct 216  Q
    |||||| ||||||||||||||||||| ||| |||| |||||||||||  ||| ||||||||| || |||||||||||||    
T  24140921 accatgtaacttattgtctcgcaaaaccaatacttccaaatattgcagtgttagaagccaatcagaaaaattgtcttct 24140999  T

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