View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3265_low_3 (Length: 648)
Name: NF3265_low_3
Description: NF3265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3265_low_3 |
 | |
|
| [»] scaffold0225 (1 HSPs) |
| | |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-150; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 16489427 - 16489800
Alignment:
| Q |
1 |
accaaaaacaaccattaacctatgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccact |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
16489427 |
accaaaaacaaccgttaacctatgccaagtaaagtgaatggactaagccaccacctatgatagttaaaaagaagatgaacaaacttcaccttcaaccact |
16489526 |
T |
|
| Q |
101 |
ggaatgttaacaacttaatcctatccaccacctgtttaatagaactcactttggcattaaaaatcctattatttcgttccttccaaatctcccacattgt |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
16489527 |
ggaaagttaacaacttaatcctatccaccacctgattaatagagctcactttggcattaaaaatcctattattccgttccttccaaatctcccacatagt |
16489626 |
T |
|
| Q |
201 |
cgcgtaccagatcacctgaagaatagattgcttcgtcttagaaacaccacccaaagaaatgaactgctgaaaatgcctttgaatgttttgaggcactaca |
300 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| ||||| | ||| |||||||||||| |||||||||||||||||| |||||||| ||| |
|
|
| T |
16489627 |
cgcgtaccagatcacctgaaggatagattgcttcgtcttagagacaccgcataaataaatgaactgcttaaaatgcctttgaatgttatgaggcacgaca |
16489726 |
T |
|
| Q |
301 |
gtaac--taccaatccatttaaaaatagcaccccaaaccgaaccnnnnnnnttacaatgaataaacaaatgatt |
372 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
16489727 |
gtaactataccaatccattgaaaaatagcaccccaaaccgaaccaaaaaaattacaatgaataaacaaatgatt |
16489800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 7 - 248
Target Start/End: Original strand, 7179003 - 7179244
Alignment:
| Q |
7 |
aacaaccattaacctatgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccactggaatg |
106 |
Q |
| |
|
|||||| |||| ||||| || |||||||| | ||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||| ||| | |
|
|
| T |
7179003 |
aacaactattagcctattcctagtaaagtaattggactaagccaccaatcatgatagttaaagggaagagttacaaacttcaccttcaaccacttgaaag |
7179102 |
T |
|
| Q |
107 |
ttaacaacttaatcctatccaccacctgtttaatagaactcactttggcattaaaaatcctattatttcgttccttccaaatctcccacattgtcgcgta |
206 |
Q |
| |
|
||||||||||||| | |||||||| || ||||||||| || || |||||||||||||||||||| | |||||||||||||||| |||||||||| | |
|
|
| T |
7179103 |
ttaacaacttaattatgtccaccacttgcagaatagaactaacctttgcattaaaaatcctattattcctttccttccaaatctcctacattgtcgcaaa |
7179202 |
T |
|
| Q |
207 |
ccagatcacctgaagaatagattgcttcgtcttagaaacacc |
248 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7179203 |
ccaaatcacctgaagaatagattgcttcgtcttagagacacc |
7179244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 30 - 241
Target Start/End: Original strand, 41255033 - 41255244
Alignment:
| Q |
30 |
taaagtgaatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccactggaatgttaacaacttaatcctatccacc |
129 |
Q |
| |
|
||||| ||| |||||||||||||| |||||||||||||| ||||||| | || | || ||||||||||||| |||||||| |||||||||| ||||||| |
|
|
| T |
41255033 |
taaagggaacggactaagccaccaaccatgatagttaaagggaagataagcatagttaaccttcaaccacttgaatgttagtaacttaatccgatccacc |
41255132 |
T |
|
| Q |
130 |
acctgtttaatagaactcactttggcattaaaaatcctattatttcgttccttccaaatctcccacattgtcgcgtaccagatcacctgaagaatagatt |
229 |
Q |
| |
|
||||| |||| ||||| || ||||||||||| | || || | ||||||||| || |||||||| ||||| || | ||||||||||||||||||| |
|
|
| T |
41255133 |
acctgcataatggaactattcttagcattaaaaattatgttgttcctttccttccatatttcccacatagtcgcacactaaatcacctgaagaatagatt |
41255232 |
T |
|
| Q |
230 |
gcttcgtcttag |
241 |
Q |
| |
|
|| ||| ||||| |
|
|
| T |
41255233 |
gcctcgacttag |
41255244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 30 - 196
Target Start/End: Complemental strand, 38685863 - 38685697
Alignment:
| Q |
30 |
taaagtgaatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccactggaatgttaacaacttaatcctatccacc |
129 |
Q |
| |
|
||||||||| ||||||| |||||| |||||||||||||| |||||| | || ||||||||||| |||||| | |||| |||||||||| | |||||| |
|
|
| T |
38685863 |
taaagtgaacggactaatccaccaaccatgatagttaaagggaagagtagcatacttcaccttcgaccacttataagttagcaacttaatcatgtccacc |
38685764 |
T |
|
| Q |
130 |
acctgtttaatagaactcactttggcattaaaaatcctattatttcgttccttccaaatctcccaca |
196 |
Q |
| |
|
||||| || ||||| ||| ||| ||||||| |||||||| | |||||||||||| ||||||| |
|
|
| T |
38685763 |
acctgaacgattgaactatgttttgcaataaaaattctattattcctttccttccaaatttcccaca |
38685697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 120
Target Start/End: Original strand, 33191201 - 33191289
Alignment:
| Q |
32 |
aagtgaatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccactggaatgttaacaacttaatc |
120 |
Q |
| |
|
||||||| |||||||||||||| |||||||| || || |||||| | |||| |||| |||||||||| | ||||||||||||||||| |
|
|
| T |
33191201 |
aagtgaacggactaagccaccaaccatgataattgaagggaagagtatcaaatttcaacttcaaccacgtgtatgttaacaacttaatc |
33191289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 10617023 - 10616937
Alignment:
| Q |
14 |
attaacctatgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccact |
100 |
Q |
| |
|
|||| |||||||| | ||||| ||| | |||||||||||| ||||||||||| ||||||| | | |||||||||||| |||||||| |
|
|
| T |
10617023 |
attagcctatgcctaataaagcgaacgaactaagccaccaaccatgatagttgaaaggaatagtagcaaacttcacctccaaccact |
10616937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 133
Target Start/End: Complemental strand, 38233320 - 38233202
Alignment:
| Q |
15 |
ttaacctatgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccactggaatgttaacaac |
114 |
Q |
| |
|
|||||||||||| | ||||||||| |||||| |||||| |||||||| ||||| |||||| || |||||||||||||||||| | |||| || | |
|
|
| T |
38233320 |
ttaacctatgcctaataaagtgaaaggactagaccaccaaccatgataattaaagggaagagatgcatacttcaccttcaaccacttataagttagcagc |
38233221 |
T |
|
| Q |
115 |
ttaatcctatccaccacct |
133 |
Q |
| |
|
|||||| | |||||||||| |
|
|
| T |
38233220 |
ttaatcttgtccaccacct |
38233202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 37929206 - 37929141
Alignment:
| Q |
34 |
gtgaatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccac |
99 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||| |||||| | ||| ||||||||||||||| |
|
|
| T |
37929206 |
gtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac |
37929141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 5048605 - 5048545
Alignment:
| Q |
14 |
attaacctatgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaag |
74 |
Q |
| |
|
||||||||||||| |||| ||||| |||||||||||||| |||||| |||| || ||||| |
|
|
| T |
5048605 |
attaacctatgcccagtatggtgaacggactaagccaccaaccatgaaagttgaagggaag |
5048545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 39896260 - 39896308
Alignment:
| Q |
19 |
cctatgccaagtaaagtgaatggactaagccaccacccatgatagttaa |
67 |
Q |
| |
|
|||||||| |||||||| || ||||||||||||||||||| ||| |||| |
|
|
| T |
39896260 |
cctatgcctagtaaagtaaacggactaagccaccacccataatatttaa |
39896308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 42806256 - 42806643
Alignment:
| Q |
1 |
accaaaaacaaccattaacctatgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccact |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42806256 |
accaaaaacaaccattatcctatgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagagtgacaaacttcaccttcaaccaca |
42806355 |
T |
|
| Q |
101 |
ggaatgttaacaacttaatcctatccaccacctgtttaatagaactcactttggcattaaaaatcctattatttcgttccttccaaatctcccacattgt |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||| || |
|
|
| T |
42806356 |
ggaaagttaacaacttaatcctatccaccacctgtttaatagagctcactttggcattaaaaatcctattattcctttccttccaaatctcccacatagt |
42806455 |
T |
|
| Q |
201 |
cgcgtaccagatcacctgaagaatagattgcttcgtcttagaaacaccacccaaagaaatgaactgctgaaaatgcctttgaatgttttgaggcactaca |
300 |
Q |
| |
|
|||| | |||||||||||||| |||||||||||| ||||||| ||||| | ||| || ||||||||| |||||||||||| ||||| |||||||| ||| |
|
|
| T |
42806456 |
cgcgaaacagatcacctgaaggatagattgcttcatcttagagacaccgcataaataactgaactgcttaaaatgcctttggatgttatgaggcacgaca |
42806555 |
T |
|
| Q |
301 |
gtaac--taccaatccatttaaaaatagcaccccaaaccgaaccnnnnnnnttacaatgaataaacaaatgattagatgtttcaatga |
386 |
Q |
| |
|
||||| |||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42806556 |
gtaactataccaatccattgaaaaatagcactccaaaccgaaccaaaaaaattacaatgaataaacaaatgattagatgtttcaatga |
42806643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 22534135 - 22533747
Alignment:
| Q |
1 |
accaaaaacaaccattaacctatgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccact |
100 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
22534135 |
accaagaacaaccattaacctattccaagtaaagtaaatggactaagccaccacccatgatagttaaaaggaagagtgacaaacttcaccttcaaccact |
22534036 |
T |
|
| Q |
101 |
ggaatgttaacaac-ttaatcctatccaccacctgtttaatagaactcactttggcattaaaaatcctattatttcgttccttccaaatctcccacattg |
199 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||| | |||||||||||||| |||||| | |
|
|
| T |
22534035 |
ggaaagttaacaaccttaatcctatccaccacctgtataatagagctcactttggcattaaaaatcatattattcctttccttccaaatcttccacatag |
22533936 |
T |
|
| Q |
200 |
tcgcgtaccagatcacctgaagaatagattgcttcgtcttagaaacaccacccaaagaaatgaactgctgaaaatgcctttgaatgttttgaggcactac |
299 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||| ||||| | ||| || ||||||||| |||||||||| ||||||| | |||||| || |
|
|
| T |
22533935 |
tcgcgaaccagatcacctgaagtatagattgcttcgtcttagagacaccgcataaataactgaactgcttaaaatgccttagaatgttattaggcacgac |
22533836 |
T |
|
| Q |
300 |
agtaac--taccaatccatttaaaaatagcaccccaaaccgaaccnnnnnnnttacaatgaataaacaaatgattagatgtttcaatga |
386 |
Q |
| |
|
|||||| |||||||||||| ||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22533835 |
agtaactataccaatccattgaaaaatagcactccaaaccgaatcaaaaaaattacaatgaataaacaaatgattagatgtttcaatga |
22533747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 6 - 386
Target Start/End: Original strand, 29542359 - 29542741
Alignment:
| Q |
6 |
aaacaaccattaacctatgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccactggaat |
105 |
Q |
| |
|
||||| || |||||| || || |||||||| ||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
29542359 |
aaacacccgttaaccaattcctagtaaagtaaatggactaagccaccaaccatgatagttaaagggaagagtgacaaacttcaccttcaaccactggaaa |
29542458 |
T |
|
| Q |
106 |
gttaacaacttaatcctatccaccacctgtttaatagaactcactttggcattaaaaatcctattatttcgttccttccaaatctcccacattgtcgcgt |
205 |
Q |
| |
|
|||| ||| |||||| | |||||||||||| ||||||| || || ||||||||||||||||||||||| | ||||||||||||||||||||| ||||| |
|
|
| T |
29542459 |
gttagcaagttaatcatgtccaccacctgtataatagagctaaccttggcattaaaaatcctattattcctttccttccaaatctcccacatagtcgcaa |
29542558 |
T |
|
| Q |
206 |
accagatcacctgaagaatagattgcttcgtcttagaaacaccacccaaagaaatgaactgctgaaaatgcctttgaatgttttgaggcactacagtaac |
305 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||| ||||||| ||| || ||||||||| |||||||||||||||||| | |||||| || ||||| |
|
|
| T |
29542559 |
accaaatcacttgaagaatagattgcttcgtcttagagacaccacataaataactgaactgcttaaaatgcctttgaatgttattaggcacgaccgtaac |
29542658 |
T |
|
| Q |
306 |
t--accaatccatttaaaaatagcaccccaaaccgaaccnnnnnnnttacaatgaataaacaaatgattagatgtttcaatga |
386 |
Q |
| |
|
| ||||||||||| ||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29542659 |
tacaccaatccattgaaaaatagcactccaaactgaaccaaaaaaattacaatgaataaacaaatgattagatgtttcaatga |
29542741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 41878824 - 41878437
Alignment:
| Q |
1 |
accaaaaacaaccattaacctatgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccact |
100 |
Q |
| |
|
|||||||||| || ||||||||| || |||||||| ||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
41878824 |
accaaaaacacccgttaacctattcctagtaaagtaaatggactaagccaccaaccatgatagttaaagggaagagtgacaaacttcaccttcaaccact |
41878725 |
T |
|
| Q |
101 |
ggaatgttaacaacttaatcctatccaccacctgtttaatagaactcactttggcattaaaaatcctattatttcgttccttccaaatctcccacattgt |
200 |
Q |
| |
|
|||| |||| |||||||||||| |||||||| ||| ||||| | | || ||||||||||||||||||||||| | ||||||||||||||||||||| || |
|
|
| T |
41878724 |
ggaaagttagcaacttaatcctgtccaccacttgtataatatagccaaccttggcattaaaaatcctattattcctttccttccaaatctcccacatagt |
41878625 |
T |
|
| Q |
201 |
cgcgtaccagatcacctgaagaatagattgcttcgtcttagaaacaccacccaaagaaatgaactgctgaaaatgcctttgaatgttttgaggcactaca |
300 |
Q |
| |
|
||| |||| ||||||||||| || ||||||||||||||||| ||||| | ||| || ||||||||| |||||||||||||| ||| | |||||| || |
|
|
| T |
41878624 |
cgcaaaccatatcacctgaagtatcgattgcttcgtcttagagacaccgcataaataactgaactgcttaaaatgcctttgaacgttcttaggcacgacc |
41878525 |
T |
|
| Q |
301 |
gtaac--taccaatccatttaaaaatagcaccccaaaccgaaccnnnnnnnttacaatgaataaacaaatgattagatgtttcaatga |
386 |
Q |
| |
|
||||| |||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41878524 |
gtaactataccaatccattgaaaaatagcactccaaaccgaaccaaaaaaattacaatgaataaacaaatgattagatgtttcaatga |
41878437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 53876866 - 53877098
Alignment:
| Q |
19 |
cctatgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccactggaatgttaacaacttaa |
118 |
Q |
| |
|
|||||||| |||||||| || |||| |||||||||||||||||| ||||| |||||| |||||||||||||| ||||||| ||| || |||||||||| |
|
|
| T |
53876866 |
cctatgcctagtaaagtaaacggaccaagccaccacccatgataattaaagggaagagttacaaacttcacctttaaccacttgaaagtcaacaacttaa |
53876965 |
T |
|
| Q |
119 |
tcctatccaccacctgtttaatagaactcactttggcattaaaaatcctattatttcgttccttccaaatctcccacattgtcgcgtaccagatcacctg |
218 |
Q |
| |
|
| | |||||||||||| ||| |||||| || || ||| |||||||||||||||||| |||||||||||||| ||||||||| || |||| |||||||| |
|
|
| T |
53876966 |
ttttgtccaccacctgtataacagaactaacctttgcaataaaaatcctattatttctttccttccaaatcttccacattgttgcaaaccaaatcacctg |
53877065 |
T |
|
| Q |
219 |
aagaatagattgcttcgtcttagaaacaccacc |
251 |
Q |
| |
|
|| ||||||||||| | ||||| |||||||| |
|
|
| T |
53877066 |
gaggatagattgcttggatttagagacaccacc |
53877098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 22 - 251
Target Start/End: Complemental strand, 6926062 - 6925833
Alignment:
| Q |
22 |
atgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccactggaatgttaacaacttaatcc |
121 |
Q |
| |
|
||||| ||||| || || ||||||||||||||||||||||| ||||| |||||| |||||||||||||| ||||||| | | || ||||||||||| |
|
|
| T |
6926062 |
atgcctagtaatgtaaacggactaagccaccacccatgataattaaagggaagagttacaaacttcacctttaaccacttgtaagtcaacaacttaattt |
6925963 |
T |
|
| Q |
122 |
tatccaccacctgtttaatagaactcactttggcattaaaaatcctattatttcgttccttccaaatctcccacattgtcgcgtaccagatcacctgaag |
221 |
Q |
| |
|
| |||||||||||| ||| |||||| || || | |||||||||||||||||||| |||||||||||||||||||||||| || |||| |||||||| || |
|
|
| T |
6925962 |
tgtccaccacctgtataacagaactaacctttgtattaaaaatcctattatttctttccttccaaatctcccacattgttgcaaaccaaatcacctggag |
6925863 |
T |
|
| Q |
222 |
aatagattgcttcgtcttagaaacaccacc |
251 |
Q |
| |
|
|||||| ||||| | | |||| |||||||| |
|
|
| T |
6925862 |
aatagagtgcttggacctagagacaccacc |
6925833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 7 - 173
Target Start/End: Original strand, 19979251 - 19979417
Alignment:
| Q |
7 |
aacaaccattaacctatgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccactggaatg |
106 |
Q |
| |
|
||||||||||| ||||| | |||||||| ||||| ||||||||||| |||||||||||||| |||||| |||||||||||||||||||||| ||| | |
|
|
| T |
19979251 |
aacaaccattagcctatttctagtaaagtaaatgggctaagccaccaaccatgatagttaaagggaagagttacaaacttcaccttcaaccacttgaaag |
19979350 |
T |
|
| Q |
107 |
ttaacaacttaatcctatccaccacctgtttaatagaactcactttggcattaaaaatcctattatt |
173 |
Q |
| |
|
|||||| ||||||| | ||||||||||| ||||||||| | || |||||||||||||||||||| |
|
|
| T |
19979351 |
ttaacagcttaatcatgtccaccacctgcagaatagaactagcctttgcattaaaaatcctattatt |
19979417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 43 - 218
Target Start/End: Complemental strand, 47161078 - 47160903
Alignment:
| Q |
43 |
ctaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccactggaatgttaacaacttaatcctatccaccacctgtttaatag |
142 |
Q |
| |
|
||||||||||| ||||| || || || |||||| | |||||||||||||||||||| || |||||||||||||||||||||||||| || ||| | |
|
|
| T |
47161078 |
ctaagccaccaaccatggtaattgaatggaagagaaggaaacttcaccttcaaccacttaaaagttaacaacttaatcctatccaccacttgcaaaattg |
47160979 |
T |
|
| Q |
143 |
aactcactttggcattaaaaatcctattatttcgttccttccaaatctcccacattgtcgcgtaccagatcacctg |
218 |
Q |
| |
|
| || | |||| ||||||||| || ||||| | |||||||||||| |||||| ||||||| |||| |||||||| |
|
|
| T |
47160978 |
agctttccttgggattaaaaattctgttattcctttccttccaaatttcccacgttgtcgcaaaccaaatcacctg |
47160903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 235; Significance: 1e-129; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 28400627 - 28400261
Alignment:
| Q |
1 |
accaaaaacaaccattaacctatgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccact |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
28400627 |
accaaaaacaaccattatcctatgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagagtgacaaacttcaccttcatccact |
28400528 |
T |
|
| Q |
101 |
ggaatgttaacaacttaatcctatccaccacctgtttaatagaactcactttggcattaaaaatcctattatttcgttccttccaaatctcccacattgt |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||| || |
|
|
| T |
28400527 |
ggaaagttaacaacttaatcctatccaccacctgtttaatagagctcactttggcattaaaaatcctattattcctttccttccaaatctcccacatagt |
28400428 |
T |
|
| Q |
201 |
cgcgtaccagatcacctgaagaatagattgcttcgtcttagaaacaccacccaaagaaatgaactgctgaaaatgcctttgaatgttttgaggcactaca |
300 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||| ||||||| ||||| | ||| || ||||||||| |||||||||||| ||||| |||||||| ||| |
|
|
| T |
28400427 |
cgcgaaccagatcacctgaaggatagattgcttcatcttagagacaccgcataaataactgaactgcttaaaatgcctttggatgttatgaggcacgaca |
28400328 |
T |
|
| Q |
301 |
gtaact--accaatccatttaaaaatagcaccccaaaccgaaccnnnnnnnttacaatgaataaaca |
365 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
28400327 |
gtaactaaaccaatccattaaaaaatagcactccaaaccgaaccaaaaaaattacaatgaataaaca |
28400261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 5 - 280
Target Start/End: Original strand, 28442116 - 28442391
Alignment:
| Q |
5 |
aaaacaaccattaacctatgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccactggaa |
104 |
Q |
| |
|
|||||| || ||||||||| || | |||||| ||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
28442116 |
aaaacacccgttaacctattcctaataaagtaaatggactaagccaccaaccatgatagttaaagggaagagagacaaacttcaccttcaaccactggaa |
28442215 |
T |
|
| Q |
105 |
tgttaacaacttaatcctatccaccacctgtttaatagaactcactttggcattaaaaatcctattatttcgttccttccaaatctcccacattgtcgcg |
204 |
Q |
| |
|
|||| ||||||||| | |||||||| ||| ||||||| || || ||||||||||||||| ||||||| | ||||||||||||||||||||| ||||| |
|
|
| T |
28442216 |
agttagcaacttaatgttgtccaccacgtgtataatagagctaaccttggcattaaaaatcatattattcctttccttccaaatctcccacatagtcgca |
28442315 |
T |
|
| Q |
205 |
taccagatcacctgaagaatagattgcttcgtcttagaaacaccacccaaagaaatgaactgctgaaaatgccttt |
280 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||||| | ||| || ||||||||| |||||| |||| |
|
|
| T |
28442316 |
aaccaaatcacttgaagaatagattgcttcgtcttagaaacaccgcataaataactgaactgcttaaaatgtcttt |
28442391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 48973765 - 48973533
Alignment:
| Q |
19 |
cctatgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccactggaatgttaacaacttaa |
118 |
Q |
| |
|
||||||| ||||| || || ||||||||||||||||||||||| ||||| |||||| |||||||||||||| ||||||| ||| || |||||||||| |
|
|
| T |
48973765 |
cctatgcgtagtaatgtaaacggactaagccaccacccatgataattaaagggaagagttacaaacttcacctttaaccacttgaaagtcaacaacttaa |
48973666 |
T |
|
| Q |
119 |
tcctatccaccacctgtttaatagaactcactttggcattaaaaatcctattatttcgttccttccaaatctcccacattgtcgcgtaccagatcacctg |
218 |
Q |
| |
|
| | |||||||||||| ||| |||||| || || ||||||||||| |||||||||| |||||||||||||||| ||||||| || |||| |||||||| |
|
|
| T |
48973665 |
ttttgtccaccacctgtataacagaactaacctttgcattaaaaattctattatttctttccttccaaatctccgacattgttgcaaaccaaatcacctg |
48973566 |
T |
|
| Q |
219 |
aagaatagattgcttcgtcttagaaacaccacc |
251 |
Q |
| |
|
|||||||||||||||| |||||| |||||||| |
|
|
| T |
48973565 |
gagaatagattgcttcgacttagagacaccacc |
48973533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 5411865 - 5411624
Alignment:
| Q |
7 |
aacaaccattaacctatgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccactggaatg |
106 |
Q |
| |
|
|||||| |||| ||||| | |||||||| || ||||||||||| || |||||||||||||| |||||| |||||||||||||||||||||| ||| |
|
|
| T |
5411865 |
aacaacaattagcctattcttagtaaagtaaacggactaagccaacaaccatgatagttaaagggaagagttacaaacttcaccttcaaccacttgaaat |
5411766 |
T |
|
| Q |
107 |
ttaacaacttaatcctatccaccacctgtttaatagaactcactttggcattaaaaatcctattatttcgttccttccaaatctcccacattgtcgcgta |
206 |
Q |
| |
|
|||||||||||||||| |||||||| || ||||||| | | || ||||||||||| ||||| || || ||||||||||| |||||||||||| | |
|
|
| T |
5411765 |
ttaacaacttaatcctgtccaccacttgcataatagagttatcctttgcattaaaaattctattgttcatttgcttccaaatcttccacattgtcgcaaa |
5411666 |
T |
|
| Q |
207 |
ccagatcacctgaagaatagattgcttcgtcttagaaacacc |
248 |
Q |
| |
|
||| |||||||||||||||||||| ||| |||||| ||||| |
|
|
| T |
5411665 |
ccaaatcacctgaagaatagattgtctcgacttagagacacc |
5411624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 383 - 445
Target Start/End: Complemental strand, 14938548 - 14938486
Alignment:
| Q |
383 |
atgatattatttaatattagaattttatagtttttacggatatttaactttaaaggtgaaaat |
445 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
14938548 |
atgatattatttaatattagaattttatagtttttacagatatttaactttaaaggtgaaaat |
14938486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 20 - 247
Target Start/End: Complemental strand, 45718445 - 45718219
Alignment:
| Q |
20 |
ctatgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccactggaatgttaacaacttaat |
119 |
Q |
| |
|
||||||| |||||||| || || ||||||||||| |||||||| ||||| |||||| |||| |||| ||||| ||||| || |||||||||||||| |
|
|
| T |
45718445 |
ctatgcctagtaaagtaaacgg-ctaagccaccaaccatgataattaaagggaagagtggcaaatttcatcttcagccacttcaaagttaacaacttaat |
45718347 |
T |
|
| Q |
120 |
cctatccaccacctgtttaatagaactcactttggcattaaaaatcctattatttcgttccttccaaatctcccacattgtcgcgtaccagatcacctga |
219 |
Q |
| |
|
| | ||||||||||| |||| || || | || ||||||||||| || || || | |||||||||||| ||| |||||||||| ||||||||||||| |
|
|
| T |
45718346 |
cttgtccaccacctgcataattgagctatcctttgcattaaaaattctgttgttcctttccttccaaatttccaacattgtcgcaaaccagatcacctgt |
45718247 |
T |
|
| Q |
220 |
agaatagattgcttcgtcttagaaacac |
247 |
Q |
| |
|
| ||| |||||| ||| ||||| ||||| |
|
|
| T |
45718246 |
aaaattgattgcctcgacttagtaacac |
45718219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 21 - 134
Target Start/End: Complemental strand, 12688290 - 12688177
Alignment:
| Q |
21 |
tatgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccactggaatgttaacaacttaatc |
120 |
Q |
| |
|
|||||| |||||||| || |||||||||||||| |||||||||||||| |||||| |||||||||||||||||||| || |||| |||||||||| |
|
|
| T |
12688290 |
tatgcctagtaaagtaaacggactaagccaccatccatgatagttaaagggaagagttggaaacttcaccttcaaccacttaaaagttagcaacttaatc |
12688191 |
T |
|
| Q |
121 |
ctatccaccacctg |
134 |
Q |
| |
|
||||||||||||| |
|
|
| T |
12688190 |
ttatccaccacctg |
12688177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 4889550 - 4889508
Alignment:
| Q |
33 |
agtgaatggactaagccaccacccatgatagttaaaaggaaga |
75 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
4889550 |
agtgaatggactaagtcaccacccatgatagttaaagggaaga |
4889508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 99
Target Start/End: Complemental strand, 26260847 - 26260785
Alignment:
| Q |
37 |
aatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccac |
99 |
Q |
| |
|
|||||||||||||||||||||||||| || || |||||| | |||||||| ||||||||||| |
|
|
| T |
26260847 |
aatggactaagccaccacccatgataattgaagggaagagaagcaaacttcgccttcaaccac |
26260785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 151; Significance: 1e-79; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 6 - 386
Target Start/End: Original strand, 29321296 - 29321678
Alignment:
| Q |
6 |
aaacaaccattaacctatgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccactggaat |
105 |
Q |
| |
|
|||||||| ||| ||||| || |||||||| ||||||||||||||||| |||| ||||||||| |||||| ||||||||||| |||||||||||||| |
|
|
| T |
29321296 |
aaacaaccgttagcctattcctagtaaagtaaatggactaagccaccaaccatcatagttaaagggaagagtgacaaacttcactttcaaccactggaaa |
29321395 |
T |
|
| Q |
106 |
gttaacaacttaatcctatccaccacctgtttaatagaactcactttggcattaaaaatcctattatttcgttccttccaaatctcccacattgtcgcgt |
205 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||| || || |||||||||||||||||||| | ||||||||||||||||||||| ||||| |
|
|
| T |
29321396 |
gttaacaacttaatcctgtccaccacctgcataatagaactaacctttgcattaaaaatcctattattcctttccttccaaatctcccacatagtcgcaa |
29321495 |
T |
|
| Q |
206 |
accagatcacctgaagaatagattgcttcgtcttagaaacaccacccaaagaaatgaactgctgaaaatgcctttgaatgttttgaggcactacagtaac |
305 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||||| | ||| || | ||||| |||||||||||||| | | | ||||||| || ||||| |
|
|
| T |
29321496 |
accaaatcacctgaagaatagattgcttcgtcttagagacaccgcataaaaaactaaactgatgaaaatgcctttggacggtatgaggcatgactgtaac |
29321595 |
T |
|
| Q |
306 |
ta--ccaatccatttaaaaatagcaccccaaaccgaaccnnnnnnnttacaatgaataaacaaatgattagatgtttcaatga |
386 |
Q |
| |
|
| |||||||| | |||||| ||| ||||||||||| |||||||||| ||| |||||||| ||||||||||||| |
|
|
| T |
29321596 |
aacgccaatccagtgaaaaatgacactccaaaccgaacaaaaaaaattacaatgaagaaataaatgattggatgtttcaatga |
29321678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 6 - 305
Target Start/End: Original strand, 11298564 - 11298863
Alignment:
| Q |
6 |
aaacaaccattaacctatgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccactggaat |
105 |
Q |
| |
|
|||||||| ||| ||||| || |||||||| ||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||| || |
|
|
| T |
11298564 |
aaacaaccgttagcctattcctagtaaagtaaatggactaagccaccaaccatgatagttaaagggaagagtgacaaacttcaccttcaaccactgaaaa |
11298663 |
T |
|
| Q |
106 |
gttaacaacttaatcctatccaccacctgtttaatagaactcactttggcattaaaaatcctattatttcgttccttccaaatctcccacattgtcgcgt |
205 |
Q |
| |
|
||||||||||||||| | ||||| || || ||||||| || || || ||||||||||| |||||||| | ||||||||||||||||||||| ||||| |
|
|
| T |
11298664 |
gttaacaacttaatcatgtccactacatgcataatagagctaacatttgcattaaaaattctattattcctttccttccaaatctcccacatagtcgcaa |
11298763 |
T |
|
| Q |
206 |
accagatcacctgaagaatagattgcttcgtcttagaaacaccacccaaagaaatgaactgctgaaaatgcctttgaatgttttgaggcactacagtaac |
305 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||| ||||| | ||| || | ||||| |||||||||||||| | ||| |||||||| || ||||| |
|
|
| T |
11298764 |
accaaatcacctgaagaatagattgtttcgtcttagagacaccgcataaaaaactaaactgatgaaaatgcctttggacgttatgaggcacgactgtaac |
11298863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 446 - 630
Target Start/End: Original strand, 14402292 - 14402466
Alignment:
| Q |
446 |
tgatagaaatgttgatgagcaaatgggccttgactttggtcaaaagcccaaagtatggagagtttatcagagaaaacgtaagaaggacatgaagggtaat |
545 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| | ||||||||||||| |
|
|
| T |
14402292 |
tgatagaaatgctgatgagcaattgggccttgactttggtcaaaagcccaaagtatggagagtttatgagagaaaacataagaaaggcatgaagggtaat |
14402391 |
T |
|
| Q |
546 |
gacgtcgagggaatgatgcatgtgatgcatggaactagtattatataagggggatagtggagagagagtctctcagctgagtttt |
630 |
Q |
| |
|
||||| ||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14402392 |
gacgtggagggaa---------tgatgcatggaactagcattatataaggggg-tagtggagagagagtctctcagctgagtttt |
14402466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 8 - 248
Target Start/End: Original strand, 32533038 - 32533278
Alignment:
| Q |
8 |
acaaccattaacctatgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccactggaatgt |
107 |
Q |
| |
|
||||| |||| |||||||| ||||||||| |||||||||||||| |||||||||||||| |||||| | ||||||||| ||||||||||| |||||| |
|
|
| T |
32533038 |
acaacaattagcctatgcctcataaagtgaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaatgt |
32533137 |
T |
|
| Q |
108 |
taacaacttaatcctatccaccacctgtttaatagaactcactttggcattaaaaatcctattatttcgttccttccaaatctcccacattgtcgcgtac |
207 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| || | || | ||||||||| | || || |||||||||||||| |||||||| ||||| || |
|
|
| T |
32533138 |
taacaacttaatcctatccaccacctacataatagagctatccttagaattaaaaattttgttgttccgttccttccaaatttcccacatagtcgcaaac |
32533237 |
T |
|
| Q |
208 |
cagatcacctgaagaatagattgcttcgtcttagaaacacc |
248 |
Q |
| |
|
|| ||||||||||||||||||||| ||| |||||| ||||| |
|
|
| T |
32533238 |
caaatcacctgaagaatagattgcctcgacttagagacacc |
32533278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 14 - 134
Target Start/End: Original strand, 18015725 - 18015845
Alignment:
| Q |
14 |
attaacctatgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccactggaatgttaacaa |
113 |
Q |
| |
|
|||| ||||||| |||||||| || ||| |||||||||| |||||||||||||| |||||| |||||||||| |||||||| || |||||||| |
|
|
| T |
18015725 |
attagcctatgcgtagtaaagtaaacggagtaagccaccaaccatgatagttaaagggaagagttgtaaacttcacccccaaccacttaaacgttaacaa |
18015824 |
T |
|
| Q |
114 |
cttaatcctatccaccacctg |
134 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
18015825 |
cttaatcctatccaccacctg |
18015845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 14 - 196
Target Start/End: Complemental strand, 18672153 - 18671972
Alignment:
| Q |
14 |
attaacctatgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccactggaatgttaacaa |
113 |
Q |
| |
|
|||| |||||||| ||||| ||||| ||||| |||||||| |||||||||||||| |||||| | | | |||||||||||||||||| | |||| ||| |
|
|
| T |
18672153 |
attagcctatgcctagtaaggtgaacggactcagccaccaaccatgatagttaaagggaaga-gtagatacttcaccttcaaccacttataagttagcaa |
18672055 |
T |
|
| Q |
114 |
cttaatcctatccaccacctgtttaatagaactcactttggcattaaaaatcctattatttcgttccttccaaatctcccaca |
196 |
Q |
| |
|
||||||| | |||||| |||| |||| || || |||| ||||||||||| | ||| | | |||||||||||| ||||||| |
|
|
| T |
18672054 |
cttaatcttgtccaccccctgaataattgagctatcttttgcattaaaaattatgttaatcctttccttccaaatttcccaca |
18671972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 21 - 134
Target Start/End: Original strand, 15117238 - 15117351
Alignment:
| Q |
21 |
tatgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccactggaatgttaacaacttaatc |
120 |
Q |
| |
|
|||||| | ||||||||| |||||| |||||| |||||||| ||||| |||||| | || |||||||||||||||||| | |||| || ||||||| |
|
|
| T |
15117238 |
tatgcctaataaagtgaaaggactactccaccaaccatgataattaaagggaagagtagcatacttcaccttcaaccacttataagttagcagcttaatc |
15117337 |
T |
|
| Q |
121 |
ctatccaccacctg |
134 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
15117338 |
atgtccaccacctg |
15117351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 119; Significance: 2e-60; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 34871698 - 34871564
Alignment:
| Q |
1 |
accaaaaacaaccattaacctatgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccact |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34871698 |
accaaaaacaaccgttaacctatgccaagtaaagtgaatggactaagccaccacctatgatagttaaaaagaagatgaacaaacttcaccttcaaccact |
34871599 |
T |
|
| Q |
101 |
ggaatgttaacaacttaatcctatccaccacctgt |
135 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |
|
|
| T |
34871598 |
ggaaagttaacaacttaatcctatccaccacctgt |
34871564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 8 - 275
Target Start/End: Complemental strand, 27855007 - 27854740
Alignment:
| Q |
8 |
acaaccattaacctatgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccactggaatgt |
107 |
Q |
| |
|
|||||||||| |||||||| || | |||||||| ||||||||||| |||||||||||||| ||||| | || |||||||||||||||||| |||||| |
|
|
| T |
27855007 |
acaaccattaccctatgcctagaatagtgaatgagctaagccaccaaccatgatagttaaagggaagggtagcatacttcaccttcaaccacttgaatgt |
27854908 |
T |
|
| Q |
108 |
taacaacttaatcctatccaccacctgtttaatagaactcactttggcattaaaaatcctattatttcgttccttccaaatctcccacattgtcgcgtac |
207 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| || | || | ||||||||| |||||||| | |||||||||||| ||||||| ||||| || |
|
|
| T |
27854907 |
taacaacttaatcctatccaccacctgcataatagagctatccttagaattaaaaattctattattcctttccttccaaatttcccacaaagtcgcaaac |
27854808 |
T |
|
| Q |
208 |
cagatcacctgaagaatagattgcttcgtcttagaaacaccacccaaagaaatgaactgctgaaaatg |
275 |
Q |
| |
|
|| ||||||||||||||||||||| ||| |||||| ||| | || ||| | ||||||||| |||||| |
|
|
| T |
27854807 |
catatcacctgaagaatagattgcctcgacttagagacaacgcctaaaagagtgaactgcttaaaatg |
27854740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 8 - 248
Target Start/End: Original strand, 40616708 - 40616948
Alignment:
| Q |
8 |
acaaccattaacctatgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccactggaatgt |
107 |
Q |
| |
|
||||| |||| |||||||| ||||||||||| |||||||||||||| ||| |||||||||| |||||| | || |||||||||||||||||| |||| | |
|
|
| T |
40616708 |
acaacaattagcctatgcctagtaaagtgaacggactaagccaccaaccaagatagttaaagggaagagtagcatacttcaccttcaaccacttgaattt |
40616807 |
T |
|
| Q |
108 |
taacaacttaatcctatccaccacctgtttaatagaactcactttggcattaaaaatcctattatttcgttccttccaaatctcccacattgtcgcgtac |
207 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| || | || | ||||||||| | | || | ||||||| |||| |||||||| ||||| || |
|
|
| T |
40616808 |
taacaacttaatcctatccaccacctgcataatagagctatccttagaattaaaaattccgtcgttcctttccttctaaatttcccacatagtcgcaaac |
40616907 |
T |
|
| Q |
208 |
cagatcacctgaagaatagattgcttcgtcttagaaacacc |
248 |
Q |
| |
|
|| ||||||||||||||||||||| ||| |||||| ||||| |
|
|
| T |
40616908 |
caaatcacctgaagaatagattgcctcgacttagagacacc |
40616948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 38343090 - 38342849
Alignment:
| Q |
7 |
aacaaccattaacctatgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccactggaatg |
106 |
Q |
| |
|
|||||| |||| | ||| || |||||||| || ||| |||| ||||| |||||||||||||| |||||| |||| ||||||||||||||||| ||| | |
|
|
| T |
38343090 |
aacaacaattagcatattcctagtaaagtaaacggattaagtcaccaaccatgatagttaaagggaagagttacaagcttcaccttcaaccacttgaaag |
38342991 |
T |
|
| Q |
107 |
ttaacaacttaatcctatccaccacctgtttaatagaactcactttggcattaaaaatcctattatttcgttccttccaaatctcccacattgtcgcgta |
206 |
Q |
| |
|
|||||||||||||||| |||||||| || ||||||| | || || ||||||||||| |||| || | |||||||||||||||||||||||||| | |
|
|
| T |
38342990 |
ttaacaacttaatcctgtccaccacttgcataatagagccaacctttgcattaaaaattatattgttcctttccttccaaatctcccacattgtcgttaa |
38342891 |
T |
|
| Q |
207 |
ccagatcacctgaagaatagattgcttcgtcttagaaacacc |
248 |
Q |
| |
|
||| |||||||||| |||||||||| ||| |||||| ||||| |
|
|
| T |
38342890 |
ccaaatcacctgaataatagattgcctcgacttagagacacc |
38342849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 40 - 231
Target Start/End: Original strand, 8566778 - 8566969
Alignment:
| Q |
40 |
ggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccactggaatgttaacaacttaatcctatccaccacctgtttaa |
139 |
Q |
| |
|
||||| |||| ||| |||| ||||||||||||||||| |||||||||||| ||||| ||||| |||| |||||||||||||||||||||||| |||| |
|
|
| T |
8566778 |
ggacttagccgccaaccattatagttaaaaggaagattggaaaacttcacctttaaccaatggaaagttagcaacttaatcctatccaccacctgattaa |
8566877 |
T |
|
| Q |
140 |
tagaactcactt-tggcattaaaaatcctattatttcgttccttccaaatctcccacattgtcgcgtaccagatcacctgaagaatagattgc |
231 |
Q |
| |
|
|||| | |||| || ||||||||| | |||||| |||||||||||| ||||| | ||| || ||||||| ||||| | |||||||||| |
|
|
| T |
8566878 |
gagaa-ttacttaacgcgttaaaaatcatgctatttctttccttccaaatttcccaaactgtagcaaaccagataacctgtaaaatagattgc |
8566969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 81 - 140
Target Start/End: Complemental strand, 11884418 - 11884359
Alignment:
| Q |
81 |
aaacttcaccttcaaccactggaatgttaacaacttaatcctatccaccacctgtttaat |
140 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||| |||||||||||| |||| |
|
|
| T |
11884418 |
aaacttcaccttcaaccacttaaaagttaacaacttaatcctgtccaccacctgtataat |
11884359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 3e-56; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 15 - 242
Target Start/End: Original strand, 11131168 - 11131395
Alignment:
| Q |
15 |
ttaacctatgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccactggaatgttaacaac |
114 |
Q |
| |
|
||||||||| || | |||||| || |||||||||||||| |||||||| ||||| |||||| ||||||||||||||||||||||| || | || |||| |
|
|
| T |
11131168 |
ttaacctattcctaataaagtaaaaggactaagccaccaaccatgataattaaagggaagagtgacaaacttcaccttcaaccactgaaaagatagcaac |
11131267 |
T |
|
| Q |
115 |
ttaatcctatccaccacctgtttaatagaactcactttggcattaaaaatcctattatttcgttccttccaaatctcccacattgtcgcgtaccagatca |
214 |
Q |
| |
|
||||||||||| ||||||||| |||||| | || ||||||||||| ||||||||||| | ||||||||||||||||||||| ||||| |||| |||| |
|
|
| T |
11131268 |
ttaatcctatctaccacctgtagaatagaggtaaccttggcattaaagatcctattattcctttccttccaaatctcccacatagtcgcaaaccaaatca |
11131367 |
T |
|
| Q |
215 |
cctgaagaatagattgcttcgtcttaga |
242 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
11131368 |
cctgaagaatagattgcttcgtcttaga |
11131395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 54870803 - 54871035
Alignment:
| Q |
19 |
cctatgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccactggaatgttaacaacttaa |
118 |
Q |
| |
|
|||||||| |||||||| || |||||||||||||| |||||||| ||||| |||||| ||||||||||| || ||||||| ||| || ||||| |||| |
|
|
| T |
54870803 |
cctatgcctagtaaagtaaacggactaagccaccaaccatgataattaaagggaagagttacaaacttcacatttaaccacttgaaagtcaacaatttaa |
54870902 |
T |
|
| Q |
119 |
tcctatccaccacctgtttaatagaactcactttggcattaaaaatcctattatttcgttccttccaaatctcccacattgtcgcgtaccagatcacctg |
218 |
Q |
| |
|
|| | |||||||||||| ||| |||||| || || |||||||||||||||||||||| |||||||||||||||||||||||| || |||| |||||||| |
|
|
| T |
54870903 |
tcttgtccaccacctgtataacagaactaacctttgcattaaaaatcctattatttctttccttccaaatctcccacattgttgcaaaccaaatcacctg |
54871002 |
T |
|
| Q |
219 |
aagaatagattgcttcgtcttagaaacaccacc |
251 |
Q |
| |
|
|||||||||||||| | |||||| |||||||| |
|
|
| T |
54871003 |
tagaatagattgcttggacttagagacaccacc |
54871035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 8 - 143
Target Start/End: Complemental strand, 10552763 - 10552628
Alignment:
| Q |
8 |
acaaccattaacctatgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccactggaatgt |
107 |
Q |
| |
|
||||| |||| |||||||| | ||||||||| |||||||||||||| |||||||||||||| |||||| | || |||||||||||||||||| |||||| |
|
|
| T |
10552763 |
acaacaattagcctatgcctactaaagtgaacggactaagccaccaaccatgatagttaaagggaagagtagcatacttcaccttcaaccacttgaatgt |
10552664 |
T |
|
| Q |
108 |
taacaacttaatcctatccaccacctgtttaataga |
143 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10552663 |
taacaacttaatcctatccaccacctgcataataga |
10552628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 15 - 134
Target Start/End: Complemental strand, 18922030 - 18921911
Alignment:
| Q |
15 |
ttaacctatgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccactggaatgttaacaac |
114 |
Q |
| |
|
|||||||||||| | ||||||||| |||||| | |||| |||||||| ||||| |||||| || |||||||||||||||||| | |||| || | |
|
|
| T |
18922030 |
ttaacctatgcctaataaagtgaaaggactagtcaaccaaccatgataattaaagggaagagatgcatacttcaccttcaaccacttataagttagcagc |
18921931 |
T |
|
| Q |
115 |
ttaatcctatccaccacctg |
134 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
18921930 |
ttaatcctgtccaccacctg |
18921911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 30739500 - 30739619
Alignment:
| Q |
15 |
ttaacctatgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccactggaatgttaacaac |
114 |
Q |
| |
|
|||||||||||| | ||||||||| |||||| |||||| |||||||| ||||| |||||| || |||||||||||||||||| | |||| || | |
|
|
| T |
30739500 |
ttaacctatgcctaataaagtgaaaggactattccaccaaccatgataattaaagggaagagatgcatacttcaccttcaaccacttataagttagcagc |
30739599 |
T |
|
| Q |
115 |
ttaatcctatccaccacctg |
134 |
Q |
| |
|
|||||| | ||||||||||| |
|
|
| T |
30739600 |
ttaatcatgtccaccacctg |
30739619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 40 - 131
Target Start/End: Original strand, 37207401 - 37207492
Alignment:
| Q |
40 |
ggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccactggaatgttaacaacttaatcctatccaccac |
131 |
Q |
| |
|
||||| ||||| || |||||||| ||||| |||||| | |||||||||||| ||||| | ||| |||| ||||||||||||||||||||| |
|
|
| T |
37207401 |
ggacttagccatcaaccatgataattaaagggaagagttataaacttcacctttaaccaattgaaagttagcaacttaatcctatccaccac |
37207492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 42527327 - 42527441
Alignment:
| Q |
19 |
cctatgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccactggaatgttaacaacttaa |
118 |
Q |
| |
|
||||||| ||||| ||||| ||| |||||||||| |||||||| || |||||||| | ||| |||||||||||||||| | | ||||||||||||| |
|
|
| T |
42527327 |
cctatgcttagtaatgtgaacggattaagccaccaaccatgataattggaaggaagagtagaaaatttcaccttcaaccacttgtaggttaacaacttaa |
42527426 |
T |
|
| Q |
119 |
tcctatccaccacct |
133 |
Q |
| |
|
|| | ||| |||||| |
|
|
| T |
42527427 |
tcatgtccgccacct |
42527441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 99
Target Start/End: Original strand, 40153935 - 40153990
Alignment:
| Q |
44 |
taagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccac |
99 |
Q |
| |
|
|||||||||| | |||||||||||| ||||||| | |||| ||||||||||||||| |
|
|
| T |
40153935 |
taagccaccaactatgatagttaaagggaagattagcaaatttcaccttcaaccac |
40153990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 52578075 - 52578018
Alignment:
| Q |
42 |
actaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccac |
99 |
Q |
| |
|
|||||||||||| |||||||| || || |||||| ||||||||||||||||||||| |
|
|
| T |
52578075 |
actaagccaccaaccatgataattgaagggaagagatacaaacttcaccttcaaccac |
52578018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 109; Significance: 2e-54; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 8 - 268
Target Start/End: Complemental strand, 24739942 - 24739682
Alignment:
| Q |
8 |
acaaccattaacctatgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccactggaatgt |
107 |
Q |
| |
|
|||||||||| |||||||| || | |||||| |||||||||||||| |||||||||||||| ||||| | || |||||||||||||||||| |||||| |
|
|
| T |
24739942 |
acaaccattaccctatgcctagaatagtgaacggactaagccaccaaccatgatagttaaagggaagggtagcatacttcaccttcaaccacttgaatgt |
24739843 |
T |
|
| Q |
108 |
taacaacttaatcctatccaccacctgtttaatagaactcactttggcattaaaaatcctattatttcgttccttccaaatctcccacattgtcgcgtac |
207 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| || || || | ||||||||| |||||||| | ||||||||| || ||||||| ||||| || |
|
|
| T |
24739842 |
taacaacttaatcctatccaccacctgcataatagagctaaccttagaattaaaaattctattattcctttccttccagatttcccacaaagtcgcaaac |
24739743 |
T |
|
| Q |
208 |
cagatcacctgaagaatagattgcttcgtcttagaaacaccacccaaagaaatgaactgct |
268 |
Q |
| |
|
|| ||||||||||||||||||||| ||| ||||| ||||| || ||| || ||||||||| |
|
|
| T |
24739742 |
catatcacctgaagaatagattgcctcgatttagagacaccgcctaaaaaagtgaactgct |
24739682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 14 - 248
Target Start/End: Original strand, 841528 - 841762
Alignment:
| Q |
14 |
attaacctatgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccactggaatgttaacaa |
113 |
Q |
| |
|
|||| |||||||| ||||||||||| ||||||||||||| |||||||||||||| |||||| | || |||||||||||||||||| |||| ||||||| |
|
|
| T |
841528 |
attagcctatgcctagtaaagtgaacagactaagccaccaaccatgatagttaaagggaagagtagcatacttcaccttcaaccacttgaatattaacaa |
841627 |
T |
|
| Q |
114 |
cttaatcctatccaccacctgtttaatagaactcactttggcattaaaaatcctattatttcgttccttccaaatctcccacattgtcgcgtaccagatc |
213 |
Q |
| |
|
||||||||||||||||||||| ||||||| || | || |||||||| | || || | |||||||||||| ||||||| ||||| |||| ||| |
|
|
| T |
841628 |
cttaatcctatccaccacctgcataatagagctatccttataattaaaaaatttgttgttcctttccttccaaatttcccacaaagtcgcaaaccaaatc |
841727 |
T |
|
| Q |
214 |
acctgaagaatagattgcttcgtcttagaaacacc |
248 |
Q |
| |
|
||||| |||||||||||| ||| |||||| ||||| |
|
|
| T |
841728 |
acctggagaatagattgcctcgacttagagacacc |
841762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 22 - 188
Target Start/End: Original strand, 40426914 - 40427080
Alignment:
| Q |
22 |
atgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccactggaatgttaacaacttaatcc |
121 |
Q |
| |
|
||||| ||||||||||| ||| |||||||||| |||||||||||||| |||||| |||| ||||||| |||||| ||| | |||| ||||||||||| |
|
|
| T |
40426914 |
atgcctagtaaagtgaacggattaagccaccaaccatgatagttaaagggaagagtaacatacttcactttcaactacttacaagttagcaacttaatcc |
40427013 |
T |
|
| Q |
122 |
tatccaccacctgtttaatagaactcactttggcattaaaaatcctattatttcgttccttccaaat |
188 |
Q |
| |
|
| ||||||||||| |||| || || |||| || |||||||| | ||||| | |||||||||||| |
|
|
| T |
40427014 |
tgtccaccacctgcataattgagctatcttttgcgttaaaaattatgttattcctttccttccaaat |
40427080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 1997678 - 1997797
Alignment:
| Q |
15 |
ttaacctatgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccactggaatgttaacaac |
114 |
Q |
| |
|
|||||||||||| | ||||||||| |||||| |||||| |||||||| ||||| |||||| || |||||||||||||||||| | |||| || | |
|
|
| T |
1997678 |
ttaacctatgcctaataaagtgaaaggactattccaccaaccatgataattaaagggaagagatgcatacttcaccttcaaccacttataagttagcagc |
1997777 |
T |
|
| Q |
115 |
ttaatcctatccaccacctg |
134 |
Q |
| |
|
|||||| | ||||||||||| |
|
|
| T |
1997778 |
ttaatcatgtccaccacctg |
1997797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 1e-52; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 22 - 251
Target Start/End: Complemental strand, 21042060 - 21041831
Alignment:
| Q |
22 |
atgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccactggaatgttaacaacttaatcc |
121 |
Q |
| |
|
||||| ||||| || || ||||||||||||||||||||||| ||||| |||||| ||||||||||||| ||||||| ||| || ||||||||||| |
|
|
| T |
21042060 |
atgcctagtaatgtaaacggactaagccaccacccatgataattaaagggaagagttacaaacttcacctataaccacttgaaagtcaacaacttaattt |
21041961 |
T |
|
| Q |
122 |
tatccaccacctgtttaatagaactcactttggcattaaaaatcctattatttcgttccttccaaatctcccacattgtcgcgtaccagatcacctgaag |
221 |
Q |
| |
|
| |||||||||||| ||| |||||| || || |||||||||||||||||||||| |||||||||||||||||||||||| || |||| ||||| || || |
|
|
| T |
21041960 |
tgtccaccacctgtataacagaactaacctttgcattaaaaatcctattatttctttccttccaaatctcccacattgttgcaaaccaaatcacttggag |
21041861 |
T |
|
| Q |
222 |
aatagattgcttcgtcttagaaacaccacc |
251 |
Q |
| |
|
|||||||||||||| |||||| |||||||| |
|
|
| T |
21041860 |
aatagattgcttcgacttagagacaccacc |
21041831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 8 - 242
Target Start/End: Original strand, 7961118 - 7961352
Alignment:
| Q |
8 |
acaaccattaacctatgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccactggaatgt |
107 |
Q |
| |
|
||||| |||| |||||||| ||||||||||| | |||||||||||| ||||||||||||||| ||||| | || ||||| |||||||||||| |||||| |
|
|
| T |
7961118 |
acaacaattatcctatgcctagtaaagtgaacgaactaagccaccaaccatgatagttaaaatgaagagtagcatacttcgccttcaaccacttgaatgt |
7961217 |
T |
|
| Q |
108 |
taacaacttaatcctatccaccacctgtttaatagaactcactttggcattaaaaatcctattatttcgttccttccaaatctcccacattgtcgcgtac |
207 |
Q |
| |
|
|| |||||||||||||||||||||||| |||| | || | || ||||||||||| | || |||| ||||||||| || |||||||| ||||| || |
|
|
| T |
7961218 |
tagcaacttaatcctatccaccacctgcataatggcgctatcattagcattaaaaattatgttgtttctttccttccatatttcccacatagtcgcaaac |
7961317 |
T |
|
| Q |
208 |
cagatcacctgaagaatagattgcttcgtcttaga |
242 |
Q |
| |
|
|| ||||||||||||||||||||| ||| |||||| |
|
|
| T |
7961318 |
caaatcacctgaagaatagattgcctcgacttaga |
7961352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 12 - 242
Target Start/End: Original strand, 32017962 - 32018192
Alignment:
| Q |
12 |
ccattaacctatgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccactggaatgttaac |
111 |
Q |
| |
|
|||||| |||||||| || | || ||||| |||||||||||| |||||||| ||||| ||||| | | || ||| |||||||||||||| ||| |||||| |
|
|
| T |
32017962 |
ccattaccctatgcctagaatagagaatgaactaagccaccaaccatgataattaaagggaaggttagcatactgcaccttcaaccacttgaaagttaac |
32018061 |
T |
|
| Q |
112 |
aacttaatcctatccaccacctgtttaatagaactcactttggcattaaaaatcctattatttcgttccttccaaatctcccacattgtcgcgtaccaga |
211 |
Q |
| |
|
|||||||||||||||||||||| | |||||| || | || | |||||||| |||||||| | |||||||||||| ||||||| ||||| |||| | |
|
|
| T |
32018062 |
aacttaatcctatccaccacctctataatagggctatccttcgaattaaaaaatctattattcctttccttccaaatttcccacaaagtcgcaaaccata |
32018161 |
T |
|
| Q |
212 |
tcacctgaagaatagattgcttcgtcttaga |
242 |
Q |
| |
|
|||||||||||||||||||| ||| |||||| |
|
|
| T |
32018162 |
tcacctgaagaatagattgcctcgacttaga |
32018192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 133
Target Start/End: Complemental strand, 7465341 - 7465223
Alignment:
| Q |
15 |
ttaacctatgccaagtaaagtgaatggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccactggaatgttaacaac |
114 |
Q |
| |
|
|||||||||||| | ||||||||| |||||| |||||| |||||||| ||||| |||||| || |||||||||||||||||| | |||| || | |
|
|
| T |
7465341 |
ttaacctatgcctaataaagtgaaaggactagaccaccaaccatgataattaaagggaagagatgcatacttcaccttcaaccacttataagttagcagc |
7465242 |
T |
|
| Q |
115 |
ttaatcctatccaccacct |
133 |
Q |
| |
|
|||||| | |||||||||| |
|
|
| T |
7465241 |
ttaatcttgtccaccacct |
7465223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 16610661 - 16610602
Alignment:
| Q |
40 |
ggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccac |
99 |
Q |
| |
|
||||||||||||||||||||||| || || |||||| |||||||||| |||||||||| |
|
|
| T |
16610661 |
ggactaagccaccacccatgataattgaagggaagagaaacaaacttcgtcttcaaccac |
16610602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 39840003 - 39839962
Alignment:
| Q |
34 |
gtgaatggactaagccaccacccatgatagttaaaaggaaga |
75 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||| |||||| |
|
|
| T |
39840003 |
gtgaagggactaagccaccaaccatgatagttaaagggaaga |
39839962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0225 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: scaffold0225
Description:
Target: scaffold0225; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 40 - 251
Target Start/End: Complemental strand, 6598 - 6387
Alignment:
| Q |
40 |
ggactaagccaccacccatgatagttaaaaggaagatgaacaaacttcaccttcaaccactggaatgttaacaacttaatcctatccaccacctgtttaa |
139 |
Q |
| |
|
||||| |||||||| |||||||||||||| |||||| |||||||||||| ||||| | ||| |||| ||||||||||||||| |||||||| ||| |
|
|
| T |
6598 |
ggacttagccaccaaccatgatagttaaagggaagagttgtaaacttcacctttaaccaattgaaagttagcaacttaatcctatctaccacctgaataa |
6499 |
T |
|
| Q |
140 |
tagaactcactttggcattaaaaatcctattatttcgttccttccaaatctcccacattgtcgcgtaccagatcacctgaagaatagattgcttcgtctt |
239 |
Q |
| |
|
||| || || || |||||||||||| |||||| |||||||||||| ||||| | ||| || ||||||| ||||| | |||||||||| ||| | |
|
|
| T |
6498 |
tagtgctatctaacgccttaaaaatcctactatttctttccttccaaatttcccaaactgttgcacaccagataacctgtaaaatagattgcctcgatct |
6399 |
T |
|
| Q |
240 |
agaaacaccacc |
251 |
Q |
| |
|
|||||||||||| |
|
|
| T |
6398 |
agaaacaccacc |
6387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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