View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3265_low_5 (Length: 478)
Name: NF3265_low_5
Description: NF3265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3265_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 18 - 431
Target Start/End: Complemental strand, 34054867 - 34054454
Alignment:
| Q |
18 |
caacttacataactggatgttaagtagatagtttgtataatgctgaaggaagtgtcagagaaactgaaagtcgagagattgagctttcggtgacagagag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34054867 |
caacttacataactggatgttaagtagatagtttgtataatgctgaaggaagtgtcagagaaactgaaagtcgagagattgagctttcggtgacagagag |
34054768 |
T |
|
| Q |
118 |
atttaggaagagagttgtcgacaaaggttatgatcctagttatggtcccagacctctaagattgagctctctgtgacagggagattaaagagggtgactc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34054767 |
atttaggaagagagttgtcgacaaaggttatgatcctagttatggtcccagacctctaagattgagctctctgtgacagggagattaaagagggtgactc |
34054668 |
T |
|
| Q |
218 |
tgttatagtggatgctgattctgatggaaatgttattgtgctcaatggtagtagtggtgctccagattcattgcctcttcctatgtaatatggctgcctt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34054667 |
tgttatagtggatgctgattctgatggaaatgttattgtgctcaatggtagtagtggtgctccagattcattgcctcttcctgtgtaatatggctgcctt |
34054568 |
T |
|
| Q |
318 |
tgaattccccccactttatttatttaagctctctaatcattagtgtcaacaaatttctcaaacaaatgaaaattttgaatgcaaacaaccttttatgtga |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34054567 |
tgaattccccccactttatttatttaagctctctaatcattagtgtcaacaaatttctcaaacaaatgaacattttgaatgcaaacaaccttttatgtga |
34054468 |
T |
|
| Q |
418 |
aaacattttgttta |
431 |
Q |
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|||||||||||||| |
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| T |
34054467 |
aaacattttgttta |
34054454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 4e-39; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 198 - 292
Target Start/End: Original strand, 47383348 - 47383442
Alignment:
| Q |
198 |
gagattaaagagggtgactctgttatagtggatgctgattctgatggaaatgttattgtgctcaatggtagtagtggtgctccagattcattgcc |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
47383348 |
gagattaaagagggtgactctgttatagtggatgctgattccgatggaaatgtgattgtgctcaatggtagtagtggtgctccaaattcattgcc |
47383442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 47383132 - 47383293
Alignment:
| Q |
18 |
caacttacataactggatgttaagtagatagtttgtataatgctgaaggaagtgtcagagaaactgaaagtcga-gagattgagctttcggtgacagaga |
116 |
Q |
| |
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||||||||| ||||||| |||||| |||||| | ||||||||||||||| |||| |||| ||||||| | | ||||||||||| || |||||||||| |
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| T |
47383132 |
caacttacaaaactggaggttaaggagatagctgatataatgctgaaggaggtgttcgagagactgaaaaccaaagagattgagctctcagtgacagaga |
47383231 |
T |
|
| Q |
117 |
gatttaggaagagagttgtcgacaaaggttatgatcctagttatggtcccagacctctaaga |
178 |
Q |
| |
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|||||||| ||||||| |||||| |||||||| |||||||||||||| |||||||||||||| |
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| T |
47383232 |
gatttagggagagagtggtcgacgaaggttataatcctagttatggtgccagacctctaaga |
47383293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 198 - 292
Target Start/End: Original strand, 47818421 - 47818513
Alignment:
| Q |
198 |
gagattaaagagggtgactctgttatagtggatgctgattctgatggaaatgttattgtgctcaatggtagtagtggtgctccagattcattgcc |
292 |
Q |
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|||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||| |
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| T |
47818421 |
gagattaaagagggcgactct--tatagtggatgctgattctgatggaaatgtgattgtgctcaatggtagtagtggtgctgcaaattcattgcc |
47818513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 91 - 178
Target Start/End: Original strand, 47818279 - 47818366
Alignment:
| Q |
91 |
agagattgagctttcggtgacagagagatttaggaagagagttgtcgacaaaggttatgatcctagttatggtcccagacctctaaga |
178 |
Q |
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||||||||||||||| |||||||||||||||||| ||||||| ||||| |||||||| |||||| ||||||| |||||||||||||| |
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| T |
47818279 |
agagattgagctttcagtgacagagagatttagggagagagtggtcgatgaaggttataatcctaattatggtgccagacctctaaga |
47818366 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 372 - 426
Target Start/End: Original strand, 47383829 - 47383883
Alignment:
| Q |
372 |
ttctcaaacaaatgaaaattttgaatgcaaacaaccttttatgtgaaaacatttt |
426 |
Q |
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|||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| |
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| T |
47383829 |
ttctcaaacaaatgaacattttcaatgcaaacaagcttttatgtgaaaacatttt |
47383883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 198 - 267
Target Start/End: Original strand, 45116297 - 45116366
Alignment:
| Q |
198 |
gagattaaagagggtgactctgttatagtggatgctgattctgatggaaatgttattgtgctcaatggta |
267 |
Q |
| |
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||||| |||||||||||||| || |||||||||| |||||| || || ||||| ||||| |||||||||| |
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| T |
45116297 |
gagatcaaagagggtgactccgtaatagtggatgttgattccgagggtaatgtgattgttctcaatggta |
45116366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 9e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 195 - 292
Target Start/End: Original strand, 40246059 - 40246156
Alignment:
| Q |
195 |
agggagattaaagagggtgactctgttatagtggatgctgattctgatggaaatgttattgtgctcaatggtagtagtggtgctccagattcattgcc |
292 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| ||||| ||||||| ||||||||||||||||||||| |
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| T |
40246059 |
agggagattaaagagggcgactctgttatagtggatgctgattctgatggaaacgtgattgtactcaacggtagtactggtgctccagattcattgcc |
40246156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 28 - 178
Target Start/End: Original strand, 40245856 - 40246007
Alignment:
| Q |
28 |
aactggatgttaagtagatagtttgtataatgctgaaggaagtgtcagagaaactgaaagtcga-gagattgagctttcggtgacagagagatttaggaa |
126 |
Q |
| |
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||||||| |||||| |||||| ||||||||||||||| |||| |||| ||||||| | | ||||||||||| || |||||||||||||||||| | |
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| T |
40245856 |
aactggaggttaaggagatagcagatataatgctgaaggaggtgttcgagagactgaaaaccaaagagattgagctctcagtgacagagagatttaggga |
40245955 |
T |
|
| Q |
127 |
gagagttgtcgacaaaggttatgatcctagttatggtcccagacctctaaga |
178 |
Q |
| |
|
|||||| |||||| |||||||| ||||||||||||| |||| ||||||||| |
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|
| T |
40245956 |
gagagtggtcgacgaaggttataatcctagttatggggccaggcctctaaga |
40246007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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