View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3265_low_6 (Length: 477)
Name: NF3265_low_6
Description: NF3265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3265_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 20 - 468
Target Start/End: Original strand, 31546975 - 31547418
Alignment:
| Q |
20 |
ctgaatggcacatgatcttccttcttggccaaggcaaatatgacatcactcaatgatgacaaacttttgttaattgcctgatcacaaatgggaa-tgaag |
118 |
Q |
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| T |
31546975 |
ctgaatggcacatgatcttccttcttggccaaggcaaatatgacatcactcaatgatgacaagcttttgttaattgcctgattacaaatgaaaactgaag |
31547074 |
T |
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| Q |
119 |
tt-aaatttgtttgaaataaaataagcacaaattgaaaagaaaatatcatggctttacatacttgagtttctttcaaccggtcgcctgttgaaccactct |
217 |
Q |
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| T |
31547075 |
ttaaaactattttgaaataaaataagcatagatggaatagaaaataccatggctttacatacctgagtttctctcaaccggtcaccggttgaaccactct |
31547174 |
T |
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| Q |
218 |
ttgaaagacgctcgctaccagcaaggtcaattagattcagaacaccttgtacttgttggtcagtactctggcagcgaaataaattaggttgcattatgat |
317 |
Q |
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| T |
31547175 |
ttgaaagacgctcgctaccagcaaggtcaattagattcagaacaccttgtacttgttggtcagtactctggcagagaaataatttaggttgaattatgat |
31547274 |
T |
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| Q |
318 |
gcatttcattgttgtgactatggaaagattgagatgggaatggagaatagatataaaatatagtttagattatcatcttaagagaaacatcatcaatacc |
417 |
Q |
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| T |
31547275 |
gcatgtcattgttgtgattatgg-aagattga---gggaatgtagaatagatataaaatgcagttttgactattatcttaagagaaa---catgaatacc |
31547367 |
T |
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| Q |
418 |
tcatttacaccatatattcgaagagtgaacacgaaatgacttcttgatgat |
468 |
Q |
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| T |
31547368 |
tcatttacaccatatattcgaagggtgaacacgaaatgacttcttgatgat |
31547418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 6e-32; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 20 - 291
Target Start/End: Complemental strand, 34652426 - 34652151
Alignment:
| Q |
20 |
ctgaatggcacatgatcttccttcttggccaaggcaaatatgacatcactcaatgatgacaaacttttgttaattgcctgatcacaaatgggaatgaagt |
119 |
Q |
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| T |
34652426 |
ctgaatggaatatgatcctccttcttggccaacgcaaatataacatcacttaatgatgataaacttttatttattgcctaattacaagtg--aaagaagt |
34652329 |
T |
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| Q |
120 |
taaatttgtttgaaataaaataagcacaa----attgaaaagaaaatatc--atggctttacatacttgagtttctttcaaccggtcgcctgttgaacca |
213 |
Q |
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| || | |||| ||| ||||| || || || |||||| ||| |||| |||||| ||||||||||||||||| ||||| || ||||| ||| |
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| T |
34652328 |
ttggattataataaatcaaagaagcagaactgtataaaatagaaaacatcgtatggttttacacacttgagtttctttcaatcggtctccagttgagcca |
34652229 |
T |
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| Q |
214 |
ctctttgaaagacgctcgctaccagcaaggtcaattagattcagaacaccttgtacttgttggtcagtactctggcag |
291 |
Q |
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| T |
34652228 |
ctccttgaaagacgctcactcccagcaagatcaatgagatttagaacaccttgtacttgttggtccgtgctctggcag |
34652151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 413 - 464
Target Start/End: Complemental strand, 34651885 - 34651834
Alignment:
| Q |
413 |
atacctcatttacaccatatattcgaagagtgaacacgaaatgacttcttga |
464 |
Q |
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| T |
34651885 |
atacctcatttacaccgtatattcgaagagtgaatacgaaatgacttcttga |
34651834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 2510610 - 2510662
Alignment:
| Q |
20 |
ctgaatggcacatgatcttccttcttggccaaggcaaatatgacatcactcaa |
72 |
Q |
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| T |
2510610 |
ctgaaggggacatgatcctctttctttgccaaggcaaaaatgacatcactcaa |
2510662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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