View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3266_high_10 (Length: 330)
Name: NF3266_high_10
Description: NF3266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3266_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 35 - 324
Target Start/End: Complemental strand, 41844073 - 41843786
Alignment:
| Q |
35 |
actactacctacaaaaattaaagaggcagttagagacagatcagatatagcacaacaccgcgtggtccaccgcgtttaagaaaagcaaaattgttccaat |
134 |
Q |
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| T |
41844073 |
actactacctacaaaaattaaagaggcagttagagacagatcagatatagcacaacaccg--tggtccaccgcatttaagaaaagcaaaattgttccaat |
41843976 |
T |
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| Q |
135 |
ccttttccgtgacatcaccacgattctcttcaaattatcaagaaccattccacgtgtcgctctttaaacaacgagtccacaaaaccacagttaccccctc |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
41843975 |
ccttttccgtgacatcaccacgattctcttcaaattatcaagaaccattccacgtgtcactctttaaacaacgagtccacaaaaccacagttaccccctc |
41843876 |
T |
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| Q |
235 |
gatgcaccagataactccttcaggcgccaacacacagaaagaccaaacaactattctctcacggttcatctcatacttggttcatctcac |
324 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
41843875 |
gatgcaccagataactccttcaggcgccaacacacagaaagaccaaacaaccattctctcacggttcatctcatacttggttcttctcac |
41843786 |
T |
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