View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3266_high_14 (Length: 261)

Name: NF3266_high_14
Description: NF3266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3266_high_14
NF3266_high_14
[»] chr6 (13 HSPs)
chr6 (1-99)||(8090172-8090271)
chr6 (1-99)||(12408416-12408515)
chr6 (2-68)||(28498301-28498368)
chr6 (2-68)||(29810712-29810779)
chr6 (7-96)||(13378615-13378705)
chr6 (1-96)||(15116481-15116576)
chr6 (1-66)||(12407592-12407658)
chr6 (8-68)||(681004-681065)
chr6 (8-68)||(679957-680018)
chr6 (1-63)||(26463263-26463326)
chr6 (8-49)||(13379778-13379819)
chr6 (67-99)||(26464444-26464476)
chr6 (8-51)||(20651941-20651984)
[»] chr2 (5 HSPs)
chr2 (1-93)||(43741927-43742020)
chr2 (8-68)||(44044205-44044266)
chr2 (7-71)||(3123393-3123458)
chr2 (9-51)||(25230194-25230236)
chr2 (8-68)||(21370478-21370539)
[»] chr7 (7 HSPs)
chr7 (6-96)||(30127529-30127620)
chr7 (2-68)||(18670139-18670206)
chr7 (2-68)||(30128623-30128690)
chr7 (6-68)||(5457183-5457246)
chr7 (2-68)||(43123260-43123327)
chr7 (52-96)||(21724377-21724421)
chr7 (71-99)||(20425642-20425670)
[»] scaffold0220 (1 HSPs)
scaffold0220 (3-68)||(24622-24688)
[»] chr8 (7 HSPs)
chr8 (8-68)||(20385659-20385720)
chr8 (8-68)||(20386706-20386767)
chr8 (8-64)||(30710946-30711003)
chr8 (8-68)||(30711993-30712054)
chr8 (8-68)||(30719770-30719831)
chr8 (53-100)||(30459508-30459555)
chr8 (1-30)||(9499691-9499720)
[»] chr5 (2 HSPs)
chr5 (8-99)||(30096787-30096879)
chr5 (1-45)||(5835707-5835751)
[»] chr1 (7 HSPs)
chr1 (10-68)||(42533104-42533163)
chr1 (55-99)||(31198168-31198212)
chr1 (8-51)||(46899152-46899195)
chr1 (8-49)||(5735007-5735048)
chr1 (8-49)||(46899896-46899937)
chr1 (2-68)||(40439466-40439532)
chr1 (52-81)||(13300167-13300196)
[»] chr3 (4 HSPs)
chr3 (3-100)||(26718691-26718789)
chr3 (2-68)||(21783483-21783550)
chr3 (8-51)||(41558176-41558219)
chr3 (3-66)||(33154963-33155027)
[»] chr4 (3 HSPs)
chr4 (2-62)||(55866194-55866255)
chr4 (56-98)||(23535381-23535423)
chr4 (8-49)||(148051-148092)
[»] scaffold0182 (1 HSPs)
scaffold0182 (52-96)||(33015-33059)
[»] scaffold0008 (1 HSPs)
scaffold0008 (2-68)||(239827-239894)
[»] scaffold0181 (1 HSPs)
scaffold0181 (2-59)||(9388-9446)


Alignment Details
Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 8090271 - 8090172
Alignment:
Q  1 gcaaagtttaatcatttaaaatttggtccctgagcccaggtaattactgcc-cgtcactgattagctgatgtaacttgcgaaaagaccaaaatacccctg 99  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  8090271 gcaaagtttaatcatttaaaatttggtccctgagcccagttaattattgccacgtcgctgattagctgatgtaacttgcgaaaagaccaaaatacccctg 8090172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 12408515 - 12408416
Alignment:
Q  1 gcaaagtttaatcatttaaaatttggtccctgagcccaggtaattactg-cccgtcactgattagctgatgtaacttgcgaaaagaccaaaatacccctg 99  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||| | | | ||||||||||||||||||| ||||| ||||||||||||| ||||||    
T  12408515 gcaaagtttaatcatttaaaatttgatccctgagcccagttaattaccgtcacatcactgattagctgatgtagcttgcaaaaagaccaaaatgcccctg 12408416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 28498368 - 28498301
Alignment:
Q  2 caaagtttaatcatttaaaatttggtccctgagcccaggtaattactgcc-cgtcactgattagctga 68  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||    
T  28498368 caaagtttaatcatttaaaatttggtccctgagcccagttaatcactgccacgtcactgattagctga 28498301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 29810779 - 29810712
Alignment:
Q  2 caaagtttaatcatttaaaatttggtccctgagcccaggtaattactgcc-cgtcactgattagctga 68  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||    
T  29810779 caaagtttaatcatttaaaatttggtccctgagcccagttaatcactgccacgtcactgattagctga 29810712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 13378615 - 13378705
Alignment:
Q  7 tttaatcatttaaaatttggtccctgagcccaggtaattactgcc-cgtcactgattagctgatgtaacttgcgaaaagaccaaaataccc 96  Q
    |||||||| |||||| ||||||||| | ||||| |||| | |||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  13378615 tttaatcacttaaaaattggtccctcaacccagttaatcagtgccacgtcactgattagctgatgtaacttgtgaaaagaccaaaataccc 13378705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 15116576 - 15116481
Alignment:
Q  1 gcaaagtttaatcatttaaaatttggtccctgagcccaggtaattactgcc-cgtcactgattagctgatgtaacttgcgaaaagaccaaaataccc 96  Q
    ||||||||||||||||||||| ||||||||| | ||||| ||||   |||| |||||||||||| || |||||||||||||||| ||||||||||||    
T  15116576 gcaaagtttaatcatttaaaaattggtccctcaacccagttaatcgatgccacgtcactgattaact-atgtaacttgcgaaaataccaaaataccc 15116481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 12407592 - 12407658
Alignment:
Q  1 gcaaagtttaatcatttaaaatttggtccctgagcccaggtaattactgcc-cgtcactgattagct 66  Q
    ||||||||||||||||||||||||||||||||| || || ||||||||||| ||||||| |||||||    
T  12407592 gcaaagtttaatcatttaaaatttggtccctgaacctagttaattactgccacgtcactaattagct 12407658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 681065 - 681004
Alignment:
Q  8 ttaatcatttaaaatttggtccctgagcccaggtaattactgcc-cgtcactgattagctga 68  Q
    ||||||||||||||||| |||| ||||||||| ||||||||||| |||||||||||||||||    
T  681065 ttaatcatttaaaatttcgtccatgagcccagttaattactgccacgtcactgattagctga 681004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 679957 - 680018
Alignment:
Q  8 ttaatcatttaaaatttggtccctgagcccaggtaattactgcc-cgtcactgattagctga 68  Q
    ||||||||||||||||| |||| ||||||||| ||||||||||| | |||||||||||||||    
T  679957 ttaatcatttaaaatttcgtccatgagcccagttaattactgccacatcactgattagctga 680018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 26463263 - 26463326
Alignment:
Q  1 gcaaagtttaatcatttaaaatttggtccctgagcccaggtaattactgcc-cgtcactgatta 63  Q
    |||||||||||||||||||||||| |||||| | ||||| |||| |||||| ||||||||||||    
T  26463263 gcaaagtttaatcatttaaaatttcgtccctcatcccagttaatcactgccacgtcactgatta 26463326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 13379819 - 13379778
Alignment:
Q  8 ttaatcatttaaaatttggtccctgagcccaggtaattactg 49  Q
    ||||||||||||||||| |||||||||||||| |||||||||    
T  13379819 ttaatcatttaaaatttcgtccctgagcccagttaattactg 13379778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 26464476 - 26464444
Alignment:
Q  67 gatgtaacttgcgaaaagaccaaaatacccctg 99  Q
    |||||||||||||||||||||||||||||||||    
T  26464476 gatgtaacttgcgaaaagaccaaaatacccctg 26464444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 20651984 - 20651941
Alignment:
Q  8 ttaatcatttaaaatttggtccctgagcccaggtaattactgcc 51  Q
    ||||||||||||||||| |||||||| ||||| |||||||||||    
T  20651984 ttaatcatttaaaatttcgtccctgaacccagttaattactgcc 20651941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 43742020 - 43741927
Alignment:
Q  1 gcaaagtttaatcatttaaaatttggtccctgagcccaggtaattactgcc-cgtcactgattagctgatgtaacttgcgaaaagaccaaaata 93  Q
    ||||||||||||||||||||| ||| ||||| | ||||| ||||   |||| ||||| ||||||||||||||||||||||||||||||||||||    
T  43742020 gcaaagtttaatcatttaaaaattgatccctcaacccagttaatcggtgccacgtcattgattagctgatgtaacttgcgaaaagaccaaaata 43741927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 44044205 - 44044266
Alignment:
Q  8 ttaatcatttaaaatttggtccctgagcccaggtaattactgcc-cgtcactgattagctga 68  Q
    ||||||||||||||||| |||||||||||||  ||||||||||| |||||||||||||||||    
T  44044205 ttaatcatttaaaatttcgtccctgagcccaattaattactgccacgtcactgattagctga 44044266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 3123458 - 3123393
Alignment:
Q  7 tttaatcatttaaaatttggtccctgagcccaggtaattactgcc-cgtcactgattagctgatgt 71  Q
    |||||||||||||||||||||||| |||||||  ||||||||||| | ||||||||||||| ||||    
T  3123458 tttaatcatttaaaatttggtcccagagcccaactaattactgccacatcactgattagcttatgt 3123393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 25230194 - 25230236
Alignment:
Q  9 taatcatttaaaatttggtccctgagcccaggtaattactgcc 51  Q
    |||||||||||||||| |||||||||||||| |||||||||||    
T  25230194 taatcatttaaaatttcgtccctgagcccagttaattactgcc 25230236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 21370539 - 21370478
Alignment:
Q  8 ttaatcatttaaaatttggtccctgagcccaggtaattactgcc-cgtcactgattagctga 68  Q
    ||||| ||||||||||| |||||||||||||  |||||||| || |||||||||||||||||    
T  21370539 ttaataatttaaaatttcgtccctgagcccaattaattactaccacgtcactgattagctga 21370478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 96
Target Start/End: Original strand, 30127529 - 30127620
Alignment:
Q  6 gtttaatcatttaaaatttggtccctgagcccaggtaattactgcc-cgtcactgattagctgatgtaacttgcgaaaagaccaaaataccc 96  Q
    ||||||||| |||||| ||| ||||| | ||||| |||| | |||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  30127529 gtttaatcacttaaaaattgatccctcaacccagttaatcagtgccacgtcactgattagctgatgtaacttgcaaaaagaccaaaataccc 30127620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 18670206 - 18670139
Alignment:
Q  2 caaagtttaatcatttaaaatttggtccctgagcccaggtaattactgcc-cgtcactgattagctga 68  Q
    ||||||||||||| |||||||||||||||| ||||||  ||||||||||| |||||||||||||||||    
T  18670206 caaagtttaatcacttaaaatttggtccctaagcccatttaattactgccacgtcactgattagctga 18670139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 30128690 - 30128623
Alignment:
Q  2 caaagtttaatcatttaaaatttggtccctgagcccaggtaattactgcc-cgtcactgattagctga 68  Q
    ||||||||||||| |||||||||| ||||||||||||  ||||||||||| |||||||||||||||||    
T  30128690 caaagtttaatcacttaaaatttgatccctgagcccatttaattactgccacgtcactgattagctga 30128623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 5457246 - 5457183
Alignment:
Q  6 gtttaatcatttaaaatttggtccctgagcccaggtaattactgcc-cgtcactgattagctga 68  Q
    ||||||||||||||||||| |||||| | ||||| |||| |||||| |||||||||||||||||    
T  5457246 gtttaatcatttaaaatttcgtccctcatcccagttaatcactgccacgtcactgattagctga 5457183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 43123260 - 43123327
Alignment:
Q  2 caaagtttaatcatttaaaatttggtccctgagcccaggtaattactgcc-cgtcactgattagctga 68  Q
    |||||| ||||||||||||| || |||||||||||||  |||| |||||| |||||||||||||||||    
T  43123260 caaagtataatcatttaaaaattagtccctgagcccaattaatgactgccacgtcactgattagctga 43123327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 21724421 - 21724377
Alignment:
Q  52 cgtcactgattagctgatgtaacttgcgaaaagaccaaaataccc 96  Q
    |||||||||||||||||| ||||||  ||||||||||||||||||    
T  21724421 cgtcactgattagctgatataacttttgaaaagaccaaaataccc 21724377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 99
Target Start/End: Original strand, 20425642 - 20425670
Alignment:
Q  71 taacttgcgaaaagaccaaaatacccctg 99  Q
    |||||||||||||||||||||||||||||    
T  20425642 taacttgcgaaaagaccaaaatacccctg 20425670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 24688 - 24622
Alignment:
Q  3 aaagtttaatcatttaaaatttggtccctgagcccaggtaattactgcc-cgtcactgattagctga 68  Q
    |||||||||||||||||||||| ||| |||||||||| ||||||||||| |||||||||||||||||    
T  24688 aaagtttaatcatttaaaattttgtctctgagcccagttaattactgccacgtcactgattagctga 24622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 20385659 - 20385720
Alignment:
Q  8 ttaatcatttaaaatttggtccctgagcccaggtaattactgcc-cgtcactgattagctga 68  Q
    ||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||    
T  20385659 ttaatcatttaaaatttcgtccctgagcccagttaattactgccacgtcactgattagctga 20385720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 20386767 - 20386706
Alignment:
Q  8 ttaatcatttaaaatttggtccctgagcccaggtaattactgcc-cgtcactgattagctga 68  Q
    ||||||||||||||||| |||||||||||||| ||| ||||||| | |||||||||||||||    
T  20386767 ttaatcatttaaaatttcgtccctgagcccagttaactactgccacatcactgattagctga 20386706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 30710946 - 30711003
Alignment:
Q  8 ttaatcatttaaaatttggtccctgagcccaggtaattactg-cccgtcactgattag 64  Q
    ||||||||||||||||| |||||||||||||| ||||||||| | |||||||||||||    
T  30710946 ttaatcatttaaaatttcgtccctgagcccagttaattactgtcacgtcactgattag 30711003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 30712054 - 30711993
Alignment:
Q  8 ttaatcatttaaaatttggtccctgagcccaggtaattactgcc-cgtcactgattagctga 68  Q
    ||||||||||||||||| |||||||| ||||| ||||||||||| | |||||||||||||||    
T  30712054 ttaatcatttaaaatttcgtccctgaacccagttaattactgccacatcactgattagctga 30711993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 30719831 - 30719770
Alignment:
Q  8 ttaatcatttaaaatttggtccctgagcccaggtaattactgcc-cgtcactgattagctga 68  Q
    ||||||||||||||||| |||||||| ||||| ||||||||||| | |||||||||||||||    
T  30719831 ttaatcatttaaaatttcgtccctgaacccagttaattactgccacatcactgattagctga 30719770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 30459508 - 30459555
Alignment:
Q  53 gtcactgattagctgatgtaacttgcgaaaagaccaaaatacccctga 100  Q
    ||||||||||||||||||||||||| |||   ||||||||||||||||    
T  30459508 gtcactgattagctgatgtaacttgtgaattaaccaaaatacccctga 30459555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 9499691 - 9499720
Alignment:
Q  1 gcaaagtttaatcatttaaaatttggtccc 30  Q
    ||||||||||||||||||||||||||||||    
T  9499691 gcaaagtttaatcatttaaaatttggtccc 9499720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 30096879 - 30096787
Alignment:
Q  8 ttaatcatttaaaatttggtccctgagcccaggtaattactgcc-cgtcactgattagctgatgtaacttgcgaaaagaccaaaatacccctg 99  Q
    ||||||| |||||| ||||||||| | || || |||| | |||| | |||| |||||| ||||||||||||||||||||||||||||||||||    
T  30096879 ttaatcacttaaaaattggtccctcaacctagttaatcagtgccacatcaccgattagttgatgtaacttgcgaaaagaccaaaatacccctg 30096787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 5835707 - 5835751
Alignment:
Q  1 gcaaagtttaatcatttaaaatttggtccctgagcccaggtaatt 45  Q
    |||||||||||||||||||||||||||| |||||||||| |||||    
T  5835707 gcaaagtttaatcatttaaaatttggtctctgagcccagttaatt 5835751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 42533104 - 42533163
Alignment:
Q  10 aatcatttaaaatttggtccctgagcccaggtaattactgcc-cgtcactgattagctga 68  Q
    ||||||||||||||| ||| |||||||||| ||||||||||| |||||||||||||||||    
T  42533104 aatcatttaaaattttgtctctgagcccagttaattactgccacgtcactgattagctga 42533163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 31198212 - 31198168
Alignment:
Q  55 cactgattagctgatgtaacttgcgaaaagaccaaaatacccctg 99  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||    
T  31198212 cactgaatagttgatgtaacttgcgaaaagaccaaaatacccctg 31198168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 46899152 - 46899195
Alignment:
Q  8 ttaatcatttaaaatttggtccctgagcccaggtaattactgcc 51  Q
    ||||||||||||||||| |||||||||||||| |||||||||||    
T  46899152 ttaatcatttaaaatttcgtccctgagcccagttaattactgcc 46899195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 5735048 - 5735007
Alignment:
Q  8 ttaatcatttaaaatttggtccctgagcccaggtaattactg 49  Q
    ||||||||||||||||| |||||||||||||| |||||||||    
T  5735048 ttaatcatttaaaatttcgtccctgagcccagttaattactg 5735007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 46899937 - 46899896
Alignment:
Q  8 ttaatcatttaaaatttggtccctgagcccaggtaattactg 49  Q
    ||||||||||||||||| |||||||||||||| |||||||||    
T  46899937 ttaatcatttaaaatttcgtccctgagcccagttaattactg 46899896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 40439532 - 40439466
Alignment:
Q  2 caaagtttaatcatttaaaatttggtccctgagcccaggtaattactg-cccgtcactgattagctga 68  Q
    |||||||||||||||||||| ||||||||||| ||||  ||||||| | | |||||||||||||||||    
T  40439532 caaagtttaatcatttaaaaattggtccctga-cccatttaattaccgacacgtcactgattagctga 40439466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 81
Target Start/End: Complemental strand, 13300196 - 13300167
Alignment:
Q  52 cgtcactgattagctgatgtaacttgcgaa 81  Q
    ||||||||||||||||||||||||||||||    
T  13300196 cgtcactgattagctgatgtaacttgcgaa 13300167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 100
Target Start/End: Complemental strand, 26718789 - 26718691
Alignment:
Q  3 aaagtttaatcatttaaaatttggtccctgagcccaggtaattactgcc-cgtcactgattagctgatgtaacttgcgaaaagaccaaaatacccctga 100  Q
    ||||||||||||||||||| ||||||||| | |||   |||| |  ||| | ||| | |||||||||||||||||||||||||||||||||| ||||||    
T  26718789 aaagtttaatcatttaaaaattggtccctcaaccccattaataagcgccacatcattaattagctgatgtaacttgcgaaaagaccaaaatatccctga 26718691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 21783483 - 21783550
Alignment:
Q  2 caaagtttaatcatttaaaatttggtccctgagcccaggtaattactgcc-cgtcactgattagctga 68  Q
    |||||| |||||||| |||| |||||||||||||| || |||| |||||| |||||||||||||||||    
T  21783483 caaagtataatcattgaaaaattggtccctgagcctagttaatgactgccacgtcactgattagctga 21783550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 41558219 - 41558176
Alignment:
Q  8 ttaatcatttaaaatttggtccctgagcccaggtaattactgcc 51  Q
    ||||||||||||||||| |||| ||||||||| |||||||||||    
T  41558219 ttaatcatttaaaatttcgtccttgagcccagttaattactgcc 41558176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 33154963 - 33155027
Alignment:
Q  3 aaagtttaatcatttaaaatttggtccctgagcccaggtaattactgcc-cgtcactgattagct 66  Q
    ||||||||||||||||| | ||||||||| | ||||| |||||| ||||  ||||||||||||||    
T  33154963 aaagtttaatcatttaagaattggtccctcaacccagttaattagtgccaagtcactgattagct 33155027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 55866194 - 55866255
Alignment:
Q  2 caaagtttaatcatttaaaatttggtccctgagcccaggtaattactgcc-cgtcactgatt 62  Q
    |||||| ||||||||||||| ||||||||||| ||||| |||| |||||| |||||||||||    
T  55866194 caaagtataatcatttaaaaattggtccctgaacccagttaataactgccacgtcactgatt 55866255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 98
Target Start/End: Complemental strand, 23535423 - 23535381
Alignment:
Q  56 actgattagctgatgtaacttgcgaaaagaccaaaatacccct 98  Q
    ||||||||||||||||||||||||||  ||| |||||||||||    
T  23535423 actgattagctgatgtaacttgcgaattgacaaaaatacccct 23535381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 148092 - 148051
Alignment:
Q  8 ttaatcatttaaaatttggtccctgagcccaggtaattactg 49  Q
    ||||||||||||||||| |||| ||||||||| |||||||||    
T  148092 ttaatcatttaaaatttcgtccatgagcccagttaattactg 148051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 33059 - 33015
Alignment:
Q  52 cgtcactgattagctgatgtaacttgcgaaaagaccaaaataccc 96  Q
    |||||||||||||||||| ||||||  ||||||||||||||||||    
T  33059 cgtcactgattagctgatataacttttgaaaagaccaaaataccc 33015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 239894 - 239827
Alignment:
Q  2 caaagtttaatcatttaaaatttggtccctgagcccaggtaattactgcc-cgtcactgattagctga 68  Q
    ||||||||||||||||||||||| ||||||   ||||  ||||||||||| | |||||||||||||||    
T  239894 caaagtttaatcatttaaaatttcgtccctacacccacttaattactgccacatcactgattagctga 239827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 9446 - 9388
Alignment:
Q  2 caaagtttaatcatttaaaatttggtccctgagcccaggtaattactgcc-cgtcactg 59  Q
    |||| |||||||| |||||| ||||||||| ||||||| ||||||||||| ||||||||    
T  9446 caaaatttaatcacttaaaaattggtccctcagcccagttaattactgccacgtcactg 9388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University