View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3266_high_16 (Length: 257)
Name: NF3266_high_16
Description: NF3266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3266_high_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 5 - 252
Target Start/End: Original strand, 42265380 - 42265634
Alignment:
| Q |
5 |
tttgggttcgtctggttttggttgtttggtgatcaagtgctcactgtttggttgttt-------cgagtctcacaatttggctgtttggtgattcaagtg |
97 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42265380 |
tttgggttcttctggttttggttgtttggtgatcaagtgctcactgtttggttgtttggtgagtcgagtctcacaatttggttgtttggtgattcaagtg |
42265479 |
T |
|
| Q |
98 |
ctcacaatttggtggtttgattagattgtttctcctccttttgattattctgattgaaaattggtgttcatcaaacacaccaacatttagcagatacatt |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
42265480 |
ctcacaatttggtggtttgattagattgtttctcttctttttgattcttctgactgaaaattggtgttcatcaaacacaccaacatttggcagatacatt |
42265579 |
T |
|
| Q |
198 |
tctgaatcctcaaaatagttattcaagtcaatattatcctgctccctttgcttct |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
42265580 |
tctgaatcctcaaaatagttattcaagtcaatattatcctgctcccattgtttct |
42265634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 24225502 - 24225554
Alignment:
| Q |
67 |
ctcacaatttggctgtttggtgattcaagtgctcacaatttggtggtttgatt |
119 |
Q |
| |
|
|||||||||||| |||||||||| || |||||| |||||||||| |||||||| |
|
|
| T |
24225502 |
ctcacaatttggttgtttggtgaatcgagtgcttacaatttggttgtttgatt |
24225554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 24136914 - 24136955
Alignment:
| Q |
66 |
tctcacaatttggctgtttggtgattcaagtgctcacaattt |
107 |
Q |
| |
|
||||||||||||| |||||||||| || |||||||||||||| |
|
|
| T |
24136914 |
tctcacaatttggttgtttggtgagtcgagtgctcacaattt |
24136955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 38584180 - 38584131
Alignment:
| Q |
67 |
ctcacaatttggctgtttggtgattcaagtgctcacaatttggtggtttg |
116 |
Q |
| |
|
|||||||||||| ||||||||| | |||||||||||||||||| ||||| |
|
|
| T |
38584180 |
ctcacaatttggtagtttggtgagttaagtgctcacaatttggttgtttg |
38584131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 19825161 - 19825112
Alignment:
| Q |
67 |
ctcacaatttggctgtttggtgattcaagtgctcacaatttggtggtttg |
116 |
Q |
| |
|
|||||||||||| ||||||| || || ||||||||||||||||| ||||| |
|
|
| T |
19825161 |
ctcacaatttggttgtttggcgagtcgagtgctcacaatttggttgtttg |
19825112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 24487128 - 24487088
Alignment:
| Q |
68 |
tcacaatttggctgtttggtgattcaagtgctcacaatttg |
108 |
Q |
| |
|
||||||||||| |||||||||| |||||| ||||||||||| |
|
|
| T |
24487128 |
tcacaatttggttgtttggtgagtcaagttctcacaatttg |
24487088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University