View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3266_high_2 (Length: 602)
Name: NF3266_high_2
Description: NF3266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3266_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 18 - 588
Target Start/End: Complemental strand, 49064981 - 49064411
Alignment:
| Q |
18 |
agttttacacgtgatgtattctttttaatataaggttaaatttatgttttttcaaatgtcagaaaaattaatggaattgttgtgcttcatatagtaacaa |
117 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49064981 |
agtttgacacgtgatgtattctttttaatataaggttaaatttatgttttttcaaatgtcagaaaaattaatggaattgttgtgcttcatatagtaacaa |
49064882 |
T |
|
| Q |
118 |
atagttttgattgagattgaaaattctgtagatgagtatgaccgtgtgggtggctggatagacaaagactcatgcattgataaaaatggcccacaacaca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49064881 |
atagttttgattgagattgaaaattctgtagatgagtatgaccgtgtgggtggctggatagacaaagactcatgcattgataaaaatggcccacaacaca |
49064782 |
T |
|
| Q |
218 |
aacaagtagtagtcgagtgtttctatcatcaacatcaacaatttaaatgaggcatgtggtatgtgctcgtatagagacagacatatattgtatttgaggc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49064781 |
aacaagtagtagtcgagtgtttctatcatcaacatcaacaatttaaatgaggcatgtggtatgtgctcgtatagagacagacatatattgtatttgaggc |
49064682 |
T |
|
| Q |
318 |
attatagtcttggaattgagcaataaggtatcgtttggtgttggcctttgggcgtatcaagaggaccaaaaataagtgatgcaatcacgcatgatnnnnn |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49064681 |
attatagtcttggaattgagcaataaggtatcgtttggttttggcctttgggcgtatcaagaggaccaaaaataagtgatgcaatcacgcatgataaaaa |
49064582 |
T |
|
| Q |
418 |
nnggagacagagccaaacattatggtttgtcatgtacatgaatgttaccaataccaaacaaacttcttatgtacttaaacgtctatcagcaaggacacca |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
49064581 |
aaggagacagagccaaacattatggtttgtcatgtacatgaatgttaccaataccaaacaaacttcttatttacttaaacgtctatcagcaaggacacca |
49064482 |
T |
|
| Q |
518 |
tgtccccattcgttgttgacgtttccctttgcatcttatactacctttttctttcaaatgaattctccctc |
588 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49064481 |
tgtccccattcgttgttgacgtttccctttgcatcttatactacctttttctttcaaatgaattctccctc |
49064411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University