View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3266_high_20 (Length: 249)
Name: NF3266_high_20
Description: NF3266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3266_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 43830940 - 43831179
Alignment:
| Q |
1 |
gtaaactttttcctgttatatacctgtgttgaacacaagttctctcaactagtgactttagaagatagttacaacttacaagtgtttgtgtttcaccaac |
100 |
Q |
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| T |
43830940 |
gtaaactttttcctgttatatacctgtgttgaacacaagttctctcaactagtgactttagaagatagtaacaacttacaagtgtttgtgtttcaccaac |
43831039 |
T |
|
| Q |
101 |
aatgacacttttaacatatacacttctgtaaagttattgcacagtaatggnnnnnnnnataacagaaatgaaggtttaagataagaaccaagaaaattaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
43831040 |
aatgacacttttaacatatacacttctgtaaagttattgcacagtaatggttttttttataacagaaatgaaggtttaagataagaaccaagaaaattaa |
43831139 |
T |
|
| Q |
201 |
tgcctcttttatatcctgcttaaacatattacattctctg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
43831140 |
tgcctcttttatatcctgcttaaacatattacattctctg |
43831179 |
T |
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