View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3266_high_5 (Length: 453)
Name: NF3266_high_5
Description: NF3266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3266_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 414; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 19 - 444
Target Start/End: Complemental strand, 1892368 - 1891943
Alignment:
| Q |
19 |
catcgaacgtttatattagttcaagacgaaccattaaaggttctgttcaattttaccgaactattttaacagttcggttcaattttcctcgtagttacat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1892368 |
catcgaacgtttatattagttcaagacgaaccattaaaggttctgttcaattttaccgaactattttaacagttcggttcaattttcctcgtagttacat |
1892269 |
T |
|
| Q |
119 |
gcaatgatcacttacattttctacatgtcaatgtagtatttaatgttcatgactctttcagtgtttcatatgtttccgaacttcaattcttaaagtataa |
218 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1892268 |
tcaatgatcacttacattttctacatgtcagtgtagtatttaatgttcatgactctttcagtgtttcatatgtttccgaacttcaattcttaaagtataa |
1892169 |
T |
|
| Q |
219 |
cgtctctcattttgcataatactaatcctacctgaaaaatgtagcgtagcgatagcagaaagaagtcaattgttagcagaatgccaccaatcgcccaact |
318 |
Q |
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| T |
1892168 |
cgtctctcattttgcataatactaatcctacctgaaaaatgtagcgtagcgatagcagaaagaagtcaattgttagcagaatgccaccaatcgcccaact |
1892069 |
T |
|
| Q |
319 |
tgaatccgctgccatgagaaagccagctggttgatgaagtgatgaagaattcatgatcgacggtcctttgtagaaagtcatcacaaaagcacctgctatt |
418 |
Q |
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| T |
1892068 |
tgaatccactgccatgagaaagccagctggttgatgaagtgatgaagaattcatgatcgacggtcctttgtagaaagtcatcacaaaagcacctgctatt |
1891969 |
T |
|
| Q |
419 |
gatattatgcttcctactacctttgc |
444 |
Q |
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| T |
1891968 |
gatattatgcttcctactacctttgc |
1891943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 282 - 444
Target Start/End: Complemental strand, 1903035 - 1902873
Alignment:
| Q |
282 |
agtcaattgttagcagaatgccaccaatcgcccaacttgaatccgctgccatgagaaagccagctggttgatgaagtgatgaagaattcatgatcgacgg |
381 |
Q |
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|||||| | |||| ||||||||| |||| ||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1903035 |
agtcaaatattaggagaatgccagcaatggcccaacttgaatccactgacttgagaaagccagctggttgatgaagtgatgaagaattcatgatcgacgg |
1902936 |
T |
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| Q |
382 |
tcctttgtagaaagtcatcacaaaagcacctgctattgatattatgcttcctactacctttgc |
444 |
Q |
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| T |
1902935 |
tcctttgtagaaagtcatcacaaaagcacctgctattgatattatgcttcctactacctttgc |
1902873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 282 - 444
Target Start/End: Complemental strand, 1907268 - 1907106
Alignment:
| Q |
282 |
agtcaattgttagcagaatgccaccaatcgcccaacttgaatccgctgccatgagaaagccagctggttgatgaagtgatgaagaattcatgatcgacgg |
381 |
Q |
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|||||| | |||| ||||||||| |||| ||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1907268 |
agtcaaatattaggagaatgccagcaatggcccaacttgaatccactgacttgagaaagccagctggttgatgaagtgatgaagaattcatgatcgacgg |
1907169 |
T |
|
| Q |
382 |
tcctttgtagaaagtcatcacaaaagcacctgctattgatattatgcttcctactacctttgc |
444 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1907168 |
tcctttgtagaaagtcatcacaaaagcacctgctattgatattatgcttcctactacctttgc |
1907106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 215 - 441
Target Start/End: Complemental strand, 1912994 - 1912768
Alignment:
| Q |
215 |
ataacgtctctcattttgcataatactaatcctacctgaaaaatgtagcgtagcgatagcagaaagaagtcaattgttagcagaatgccaccaatcgccc |
314 |
Q |
| |
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||||| ||| ||||||||||||||| ||| |||||||| |||||||| | ||| || | |||||| |||||||||| |||||||| ||| |||| |||| |
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| T |
1912994 |
ataacatctatcattttgcataatagtaaccctacctgtaaaatgtaccatagtgaaaccagaaaatagtcaattgtcagcagaataccagcaatggccc |
1912895 |
T |
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| Q |
315 |
aacttgaatccgctgccatgagaaagccagctggttgatgaagtgatgaagaattcatgatcgacggtcctttgtagaaagtcatcacaaaagcacctgc |
414 |
Q |
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||||||||||| | | | |||||||| || |||||||||||||||||| ||||||||||| || |||||||||||||||||| ||||||||||||||| |
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| T |
1912894 |
aacttgaatccacagacttgagaaagtcaattggttgatgaagtgatgaggaattcatgatggattgtcctttgtagaaagtcaacacaaaagcacctgc |
1912795 |
T |
|
| Q |
415 |
tattgatattatgcttcctactacctt |
441 |
Q |
| |
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|||||||||||||||||| | |||||| |
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| T |
1912794 |
tattgatattatgcttccaattacctt |
1912768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 287 - 441
Target Start/End: Complemental strand, 1879745 - 1879591
Alignment:
| Q |
287 |
attgttagcagaatgccaccaatcgcccaacttgaatccgctgccatgagaaagccagctggttgatgaagtgatgaagaattcatgatcgacggtcctt |
386 |
Q |
| |
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|||||||| ||||||||| ||| ||||||||||||||| ||| | |||||||| || |||||||||||||| | || ||||||||||| || ||||||| |
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| T |
1879745 |
attgttagaagaatgccagcaaaagcccaacttgaatcctctgacttgagaaagtcaactggttgatgaagtaaagatgaattcatgatggatggtcctt |
1879646 |
T |
|
| Q |
387 |
tgtagaaagtcatcacaaaagcacctgctattgatattatgcttcctactacctt |
441 |
Q |
| |
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|||||||||||| ||||||||||||||||||||| ||||||||||| | |||||| |
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| T |
1879645 |
tgtagaaagtcaacacaaaagcacctgctattgagattatgcttccaattacctt |
1879591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 312 - 441
Target Start/End: Complemental strand, 1897512 - 1897383
Alignment:
| Q |
312 |
cccaacttgaatccgctgccatgagaaagccagctggttgatgaagtgatgaagaattcatgatcgacggtcctttgtagaaagtcatcacaaaagcacc |
411 |
Q |
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||||||||||||| ||| | ||||||||||| || ||||||||||||||| |||||||||| | ||||||||||||||||| | |||||||||||| |
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| T |
1897512 |
cccaacttgaatctactgacttgagaaagccaattgattgatgaagtgatgagaaattcatgatgggtggtcctttgtagaaagttaacacaaaagcacc |
1897413 |
T |
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| Q |
412 |
tgctattgatattatgcttcctactacctt |
441 |
Q |
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||||||||||||||||||||| | |||||| |
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| T |
1897412 |
tgctattgatattatgcttcccattacctt |
1897383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 284 - 429
Target Start/End: Complemental strand, 1886336 - 1886191
Alignment:
| Q |
284 |
tcaattgttagcagaatgccaccaatcgcccaacttgaatccgctgccatgagaaagccagctggttgatgaagtgatgaagaattcatgatcgacggtc |
383 |
Q |
| |
|
|||| |||||| ||||||||| |||| ||||||||||||| ||| | ||||||||||| |||||||||||| ||||| |||| |||||| || |||| |
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| T |
1886336 |
tcaactgttagaagaatgccagcaatgacccaacttgaatcaactgacttgagaaagccaattggttgatgaagagatgaggaatgcatgatggatggtc |
1886237 |
T |
|
| Q |
384 |
ctttgtagaaagtcatcacaaaagcacctgctattgatattatgct |
429 |
Q |
| |
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||||||| ||||||| ||||||||| ||| ||||||| |||||||| |
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| T |
1886236 |
ctttgtaaaaagtcaacacaaaagctcctactattgagattatgct |
1886191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 333 - 425
Target Start/End: Original strand, 27039545 - 27039637
Alignment:
| Q |
333 |
tgagaaagccagctggttgatgaagtgatgaagaattcatgatcgacggtcctttgtagaaagtcatcacaaaagcacctgctattgatatta |
425 |
Q |
| |
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||||||||||| |||||||||||||||||| ||||||||||| || ||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
27039545 |
tgagaaagccaattggttgatgaagtgatgaggaattcatgatggatggtcctttgtagaaagtcaacacaaaagcacctgctattgagatta |
27039637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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