View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3266_low_14 (Length: 296)

Name: NF3266_low_14
Description: NF3266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3266_low_14
NF3266_low_14
[»] chr2 (2 HSPs)
chr2 (7-283)||(42689628-42689904)
chr2 (8-273)||(42691954-42692219)
[»] chr8 (12 HSPs)
chr8 (7-245)||(6455970-6456208)
chr8 (10-258)||(6449490-6449738)
chr8 (151-266)||(6261943-6262058)
chr8 (8-122)||(6409068-6409182)
chr8 (8-105)||(6273405-6273502)
chr8 (7-119)||(6262182-6262294)
chr8 (8-122)||(6389819-6389933)
chr8 (8-58)||(6368901-6368951)
chr8 (8-89)||(6287672-6287753)
chr8 (8-57)||(7457983-7458032)
chr8 (8-57)||(7470385-7470434)
chr8 (8-104)||(6362080-6362176)
[»] chr5 (1 HSPs)
chr5 (7-258)||(9606275-9606526)
[»] chr3 (1 HSPs)
chr3 (29-252)||(36745926-36746149)
[»] chr7 (2 HSPs)
chr7 (10-62)||(46708217-46708269)
chr7 (166-266)||(46708978-46709078)


Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 7 - 283
Target Start/End: Original strand, 42689628 - 42689904
Alignment:
Q  7 atcatatggacggcttcagccctccacgcagctgttaattttggacaatatccttacggcggttttattctaaaccgcccaactatcagtagaagattac 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42689628 atcatatggacggcttcagccctccacgcagctgttaattttggacaatatccttacggcggttttattctaaaccgcccaactatcagtagaagattac 42689727  T
Q  107 ttcctgaggaaggaactgcacaatatgatgaaatggtgaagagtcctcaaaaggcttacttgagaacaatcacgccaaagtttcagactcttattgacct 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  42689728 ttcctgaggaaggaactgcacaatatgatgaaatggtgaagagtcctcaaaaggcttacttgagaacaatcacgccgaagtttcagactcttattgacct 42689827  T
Q  207 ttcagtgatagaaatattgtcaagacatgcttctgatgaagtttaccttggacatagagaaaatccacattggacct 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  42689828 ttcagtgatagaaatattgtcaagacatgcttctgatgaagtttaccttggacaaagagaaaatccacattggacct 42689904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 273
Target Start/End: Complemental strand, 42692219 - 42691954
Alignment:
Q  8 tcatatggacggcttcagccctccacgcagctgttaattttggacaatatccttacggcggttttattctaaaccgcccaactatcagtagaagattact 107  Q
    |||||||||  |||||||| || || |||||||||||||||||||| ||| | ||||| ||||| ||  ||||||| |||||| ||||||| |||||  |    
T  42692219 tcatatggattgcttcagctcttcatgcagctgttaattttggacagtattcctacggaggtttaatattaaaccgtccaactctcagtaggagattcat 42692120  T
Q  108 tcctgaggaaggaactgcacaatatgatgaaatggtgaagagtcctcaaaaggcttacttgagaacaatcacgccaaagtttcagactcttattgacctt 207  Q
     |||||| ||||  | ||  ||||  | ||  | || || ||||| |||||||| |||||||  ||||| || || ||||||||||| ||||| ||||||    
T  42692119 gcctgagaaagggtcagcggaatacaacgagctagtcaaaagtccacaaaaggcatacttgaagacaattacaccgaagtttcagacgcttatcgacctt 42692020  T
Q  208 tcagtgatagaaatattgtcaagacatgcttctgatgaagtttaccttggacatagagaaaatcca 273  Q
    || || ||||||||||||||||| || |||||||||||||| ||||||||| | ||||| ||||||    
T  42692019 tccgttatagaaatattgtcaaggcacgcttctgatgaagtgtaccttggagagagagacaatcca 42691954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 7 - 245
Target Start/End: Complemental strand, 6456208 - 6455970
Alignment:
Q  7 atcatatggacggcttcagccctccacgcagctgttaattttggacaatatccttacggcggttttattctaaaccgcccaactatcagtagaagattac 106  Q
    ||||||||||| |||||||| || || ||||| ||||| |||||||| |||||||| || || | ||| || ||||| |||||| | |||||||||||      
T  6456208 atcatatggactgcttcagctcttcatgcagcagttaactttggacagtatccttatggaggatatatcctgaaccgtccaactcttagtagaagattta 6456109  T
Q  107 ttcctgaggaaggaactgcacaatatgatgaaatggtgaagagtcctcaaaaggcttacttgagaacaatcacgccaaagtttcagactcttattgacct 206  Q
    |||| ||| |||||||| |  | |||||||| |||||||| |||||||||||||| || |||||||| || || |||||||||||||| || ||||| ||    
T  6456108 ttccggagcaaggaactccggagtatgatgagatggtgaaaagtcctcaaaaggcgtatttgagaactattacaccaaagtttcagaccctcattgatct 6456009  T
Q  207 ttcagtgatagaaatattgtcaagacatgcttctgatga 245  Q
    ||| ||||| || ||||||||||||||||||||||||||    
T  6456008 ttctgtgattgagatattgtcaagacatgcttctgatga 6455970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 10 - 258
Target Start/End: Complemental strand, 6449738 - 6449490
Alignment:
Q  10 atatggacggcttcagccctccacgcagctgttaattttggacaatatccttacggcggttttattctaaaccgcccaactatcagtagaagattacttc 109  Q
    |||||||| ||||| || || || |||||||||||||| ||||||||||||||||| || | ||| || ||||| ||||| || |||||||||||  |||    
T  6449738 atatggactgcttctgctcttcatgcagctgttaatttcggacaatatccttacggaggatatatcctgaaccgtccaacaattagtagaagatttattc 6449639  T
Q  110 ctgaggaaggaactgcacaatatgatgaaatggtgaagagtcctcaaaaggcttacttgagaacaatcacgccaaagtttcagactcttattgacctttc 209  Q
    | |||  ||||||| |  |||| ||||| |||||||| |||||||||||||| || |||||||| || || ||||||| ||| || ||| |||| |||||    
T  6449638 cggagccaggaactccggaatacgatgagatggtgaaaagtcctcaaaaggcgtatttgagaactattacaccaaagtatcaaacccttgttgatctttc 6449539  T
Q  210 agtgatagaaatattgtcaagacatgcttctgatgaagtttaccttgga 258  Q
     ||||| || ||||||||||||||||| || |||||||| || ||||||    
T  6449538 tgtgatcgagatattgtcaagacatgcgtccgatgaagtgtatcttgga 6449490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 266
Target Start/End: Complemental strand, 6262058 - 6261943
Alignment:
Q  151 cctcaaaaggcttacttgagaacaatcacgccaaagtttcagactcttattgacctttcagtgatagaaatattgtcaagacatgcttctgatgaagttt 250  Q
    ||||| ||||| |||||||||||||| || || |||||||| || || ||||| |||||||| |||||||||||||| || ||||||||||||||    |    
T  6262058 cctcagaaggcctacttgagaacaattacaccgaagtttcaaacgctgattgatctttcagtcatagaaatattgtcgaggcatgcttctgatgagtact 6261959  T
Q  251 accttggacatagaga 266  Q
    |||||||||| |||||    
T  6261958 accttggacaaagaga 6261943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 6409182 - 6409068
Alignment:
Q  8 tcatatggacggcttcagccctccacgcagctgttaattttggacaatatccttacggcggttttattctaaaccgcccaactatcagtagaagattact 107  Q
    |||| |||| ||||||||| || || |||||||||||||||||||||||||||||||| || |  ||| | ||||| |||||||  |||||||||||  |    
T  6409182 tcatttggatggcttcagcacttcatgcagctgttaattttggacaatatccttacggtggatacattgttaaccgaccaactaaaagtagaagattcat 6409083  T
Q  108 tcctgaggaaggaac 122  Q
     |||||| |||||||    
T  6409082 gcctgagaaaggaac 6409068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 6273502 - 6273405
Alignment:
Q  8 tcatatggacggcttcagccctccacgcagctgttaattttggacaatatccttacggcggttttattctaaaccgcccaactatcagtagaagatta 105  Q
    |||||||||  |||||||| || || |||||||||||||||||||||||||| ||||| ||||  ||||| ||||| |||||||  || |||||||||    
T  6273502 tcatatggattgcttcagcacttcatgcagctgttaattttggacaatatccgtacggtggttacattcttaaccgaccaactaaaagcagaagatta 6273405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 119
Target Start/End: Complemental strand, 6262294 - 6262182
Alignment:
Q  7 atcatatggacggcttcagccctccacgcagctgttaattttggacaatatccttacggcggttttattctaaaccgcccaactatcagtagaagattac 106  Q
    ||||||||||| |||||||| || || |||||||||||||||||||||||||| || || ||||| ||  ||||||| |||||| | |||||  |||||     
T  6262294 atcatatggactgcttcagctcttcatgcagctgttaattttggacaatatccgtatggaggtttcatattaaaccgtccaactcttagtaggcgattaa 6262195  T
Q  107 ttcctgaggaagg 119  Q
    | |||||| ||||    
T  6262194 tgcctgagaaagg 6262182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 6389933 - 6389819
Alignment:
Q  8 tcatatggacggcttcagccctccacgcagctgttaattttggacaatatccttacggcggttttattctaaaccgcccaactatcagtagaagattact 107  Q
    |||||||||  |||||||| || || |||||||||||||||||||||||||| ||||| || |  ||| | ||||| |||||||  || ||||||||  |    
T  6389933 tcatatggattgcttcagcacttcatgcagctgttaattttggacaatatccgtacggtggatacattgttaaccgaccaactaaaagcagaagattcat 6389834  T
Q  108 tcctgaggaaggaac 122  Q
     |||||| |||||||    
T  6389833 gcctgagaaaggaac 6389819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 6368951 - 6368901
Alignment:
Q  8 tcatatggacggcttcagccctccacgcagctgttaattttggacaatatc 58  Q
    |||||||||  |||||||| || || |||||||||||||||||||||||||    
T  6368951 tcatatggattgcttcagcacttcatgcagctgttaattttggacaatatc 6368901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 6287753 - 6287672
Alignment:
Q  8 tcatatggacggcttcagccctccacgcagctgttaattttggacaatatccttacggcggttttattctaaaccgcccaac 89  Q
    |||||||||  ||||| || || || || ||||||||||||||||||||||| ||||| ||||  ||||| ||||| |||||    
T  6287753 tcatatggattgcttcggcacttcatgcggctgttaattttggacaatatccgtacggtggttacattcttaaccgaccaac 6287672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 7458032 - 7457983
Alignment:
Q  8 tcatatggacggcttcagccctccacgcagctgttaattttggacaatat 57  Q
    |||||||||  |||||||| || || ||||||||||||||||||||||||    
T  7458032 tcatatggattgcttcagcacttcatgcagctgttaattttggacaatat 7457983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 7470434 - 7470385
Alignment:
Q  8 tcatatggacggcttcagccctccacgcagctgttaattttggacaatat 57  Q
    |||||||||  |||||||| || || ||||||||||||||||||||||||    
T  7470434 tcatatggattgcttcagcacttcatgcagctgttaattttggacaatat 7470385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 6362176 - 6362080
Alignment:
Q  8 tcatatggacggcttcagccctccacgcagctgttaattttggacaatatccttacggcggttttattctaaaccgcccaactatcagtagaagatt 104  Q
    |||||||||  |||||||| || || ||||| |||||||||||||||||||| || || || | |||  | ||||| |||||||  |||||||||||    
T  6362176 tcatatggattgcttcagcacttcatgcagcagttaattttggacaatatccgtatggaggatatatcgttaaccgaccaactaaaagtagaagatt 6362080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 7 - 258
Target Start/End: Original strand, 9606275 - 9606526
Alignment:
Q  7 atcatatggacggcttcagccctccacgcagctgttaattttggacaatatccttacggcggttttattctaaaccgcccaactatcagtagaagattac 106  Q
    ||||||||||| ||||| || || || ||||||||||||||||||||||||||||| || |||| |||||||||||| |||||  | ||| ||||||       
T  9606275 atcatatggactgcttctgctcttcatgcagctgttaattttggacaatatccttatggaggttatattctaaaccgtccaacacttagtcgaagatgga 9606374  T
Q  107 ttcctgaggaaggaactgcacaatatgatgaaatggtgaagagtcctcaaaaggcttacttgagaacaatcacgccaaagtttcagactcttattgacct 206  Q
    | || ||| |||||||| |  | |||||||| |||||||| |  ||||||||||| || ||||||||||| || ||||| | ||| || || ||||| ||    
T  9606375 tcccggagaaaggaactccgaattatgatgagatggtgaaaaaccctcaaaaggcatatttgagaacaattacaccaaaatatcaaaccctaattgatct 9606474  T
Q  207 ttcagtgatagaaatattgtcaagacatgcttctgatgaagtttaccttgga 258  Q
    ||| ||||| || |||||||| |||||||||||||||||| | |||||||||    
T  9606475 ttctgtgattgagatattgtctagacatgcttctgatgaaatctaccttgga 9606526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 29 - 252
Target Start/End: Original strand, 36745926 - 36746149
Alignment:
Q  29 tccacgcagctgttaattttggacaatatccttacggcggttttattctaaaccgcccaactatcagtagaagattacttcctgaggaaggaactgcaca 128  Q
    ||||||||||||| ||||| ||||||||||||||||| ||||| ||  | ||||| |||||||| |  || || ||| |||||||  | |||||   | |    
T  36745926 tccacgcagctgtcaatttcggacaatatccttacggtggtttaatcttgaaccgaccaactatgacaaggaggttaattcctgaaaagggaaccaaaga 36746025  T
Q  129 atatgatgaaatggtgaagagtcctcaaaaggcttacttgagaacaatcacgccaaagtttcagactcttattgacctttcagtgatagaaatattgtca 228  Q
    |||||| || |||| |||   |   |||| |||||| |||||||||||||| ||||||    || |||| ||||||||| | |||||||| |||||||||    
T  36746026 atatgaagagatggagaaagatgaccaaagggcttatttgagaacaatcacaccaaagaccgaggctctcattgaccttacggtgatagagatattgtca 36746125  T
Q  229 agacatgcttctgatgaagtttac 252  Q
    || |||||||||||||||||||||    
T  36746126 aggcatgcttctgatgaagtttac 36746149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 46708269 - 46708217
Alignment:
Q  10 atatggacggcttcagccctccacgcagctgttaattttggacaatatcctta 62  Q
    |||||||  ||||||||||| || |||||||| || |||||||||||||||||    
T  46708269 atatggattgcttcagccctacatgcagctgtaaaatttggacaatatcctta 46708217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 266
Target Start/End: Complemental strand, 46709078 - 46708978
Alignment:
Q  166 ttgagaacaatcacgccaaagtttcagactcttattgacctttcagtgatagaaatattgtcaagacatgcttctgatgaagtttaccttggacatagag 265  Q
    |||| |||||||||| || | || ||||||||| ||| | ||||  | |||||||| ||||| | |||| |||||||||| || ||||||||||| ||||    
T  46709078 ttgaaaacaatcacggcacaattgcagactcttgttggcatttcgcttatagaaattttgtctacacattcttctgatgaggtctaccttggacaaagag 46708979  T
Q  266 a 266  Q
    |    
T  46708978 a 46708978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University