View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3266_low_19 (Length: 251)
Name: NF3266_low_19
Description: NF3266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3266_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 237
Target Start/End: Complemental strand, 21116549 - 21116327
Alignment:
| Q |
15 |
tcacaaaaaccttgaatttctcatgcgaatccagacttacagaatctgcagtaattaagtacaaagaaaacagcgtgtaagcatatttgcatgaattgta |
114 |
Q |
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| T |
21116549 |
tcacaaaaaccttgaatttctcatgcgaatccggacttacagaatctgcagtaattaagaacaaagaaaacatagtgtaagcatatttgcatgaattgta |
21116450 |
T |
|
| Q |
115 |
cacaataaaacttgaaaaataaaattaagatgaatactcctaagaccatgtgtttttgtgcagctctttgaacttccttctccaaaattgcccacatatt |
214 |
Q |
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| T |
21116449 |
cacaataaaacttgaaaaataaaattaagatgaatactcctaagaccatgtgtttttgtgcagctctttgaacttccttctccaaaattgcccacatatt |
21116350 |
T |
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| Q |
215 |
ccatatcttctacccgcgttgtc |
237 |
Q |
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| T |
21116349 |
ccatatcttctacgcgcgttgtc |
21116327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 7e-61; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 21 - 227
Target Start/End: Original strand, 12929008 - 12929219
Alignment:
| Q |
21 |
aaaccttgaatttctcatgcgaatccagacttacagaatctgcagtaattaagtacaaagaaaacagcgtgtaagcatatttgcatgaat----tgtaca |
116 |
Q |
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| T |
12929008 |
aaaccttgaatttgtcatgtgaatttggacttacagaacctgcagtaattaagaacaaagaaaacatagtttaaggatatttgcatgaatattgtgtaca |
12929107 |
T |
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| Q |
117 |
caataaaacttgaaaaataaaattaagatgaatactcctaagaccatgtg-tttttgtgcagctctttgaacttccttctccaaaattgcccacatattc |
215 |
Q |
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| T |
12929108 |
caataaaacttcaaaaataaaattaagatgaatactcctaagaccatatgttttttgggcagctgtttgaaattccttctccgaaattgcccacatattc |
12929207 |
T |
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| Q |
216 |
catatcttctac |
227 |
Q |
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|||||||||||| |
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| T |
12929208 |
catatcttctac |
12929219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 12911902 - 12911680
Alignment:
| Q |
19 |
aaaaaccttgaatttctcatgcgaatccagacttacagaatctgcagtaattaagtacaaagaaaacagcgtgtaagcatatttgcatgaattgtacaca |
118 |
Q |
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|||||||||||| ||||||| ||| ||||||||||||||||||||||||||| |||||||||||| || |||| | |||||||||||||||||||| |
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| T |
12911902 |
aaaaaccttgaacatctcatgtaaattcagacttacagaatctgcagtaattaacaacaaagaaaacatagtttaaggagatttgcatgaattgtacaca |
12911803 |
T |
|
| Q |
119 |
ataaaacttgaaaaataaaattaagatgaatactcctaagaccatgtgtttttgtgcagctctttgaacttccttctccaaaattgcccacatattccat |
218 |
Q |
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| T |
12911802 |
aaaaaacacgaaagcaaaaattaagatgaatacccctaaaaccatatgtttttgtgcagctctttgaaattccatctccaaaattgcccgcatattccat |
12911703 |
T |
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| Q |
219 |
atcttctacccgcgttgtctctg |
241 |
Q |
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| T |
12911702 |
atcttttactggtgttgtctctg |
12911680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 97 - 225
Target Start/End: Original strand, 12902242 - 12902375
Alignment:
| Q |
97 |
atatttgcatgaattgtacacaataaaa-cttgaaaaataaaattaagatgaatactcctaagaccatgtgtttttgtgcagctctttgaacttccttct |
195 |
Q |
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|||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||| | ||| ||||||||||| |||||| |||||| || |||| |
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| T |
12902242 |
atattttcatgaattgtacacgataaaagcttgaaaaataaaattaagatgaatactcttgagatcatgtgtttttaggcagctgtttgaaatttgttct |
12902341 |
T |
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| Q |
196 |
ccaaaattgccca----catattccatatcttct |
225 |
Q |
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| T |
12902342 |
aaaaaattgcccacatgcatattccatatcttct |
12902375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 239
Target Start/End: Complemental strand, 12928313 - 12928213
Alignment:
| Q |
139 |
ttaagatgaatactcctaagaccatgtgtttttgtgcagctctttgaacttccttctccaaaattgcccacatattccatatcttctacccgcgttgtct |
238 |
Q |
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||||||| ||||||| ||||||| ||| | |||| ||||||| || | ||||||||||||||| | | ||||||||| |||||||||| |||||||| |
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| T |
12928313 |
ttaagatcaatactcttaagaccttgtttgtttgggcagctcctttatattccttctccaaaatcgtctgcatattccacatcttctaccgccgttgtct |
12928214 |
T |
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| Q |
239 |
c |
239 |
Q |
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| T |
12928213 |
c |
12928213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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