View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3266_low_2 (Length: 797)

Name: NF3266_low_2
Description: NF3266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3266_low_2
NF3266_low_2
[»] chr5 (8 HSPs)
chr5 (17-629)||(26246164-26246788)
chr5 (413-536)||(6920642-6920764)
chr5 (317-536)||(6618339-6618559)
chr5 (488-536)||(23101662-23101710)
chr5 (480-536)||(24077379-24077435)
chr5 (484-534)||(26250992-26251042)
chr5 (488-536)||(8807267-8807315)
chr5 (648-680)||(26246786-26246818)
[»] chr8 (14 HSPs)
chr8 (480-543)||(30591993-30592056)
chr8 (413-536)||(26849261-26849384)
chr8 (480-536)||(4860065-4860121)
chr8 (480-536)||(21257930-21257985)
chr8 (488-536)||(40672779-40672827)
chr8 (474-536)||(39679606-39679668)
chr8 (488-536)||(20162571-20162619)
chr8 (488-536)||(20194877-20194925)
chr8 (488-536)||(28714026-28714074)
chr8 (488-536)||(28721373-28721421)
chr8 (488-536)||(28729015-28729063)
chr8 (488-536)||(32776819-32776867)
chr8 (456-536)||(34322838-34322918)
chr8 (480-536)||(37806891-37806947)
[»] chr2 (15 HSPs)
chr2 (413-536)||(38975333-38975455)
chr2 (480-536)||(1857719-1857775)
chr2 (484-543)||(2979850-2979909)
chr2 (474-536)||(25740435-25740497)
chr2 (474-536)||(36555005-36555067)
chr2 (488-536)||(1928830-1928878)
chr2 (480-532)||(37861455-37861507)
chr2 (456-536)||(747150-747230)
chr2 (324-400)||(11913761-11913837)
chr2 (488-536)||(22336206-22336254)
chr2 (480-536)||(29198709-29198765)
chr2 (474-536)||(45167086-45167148)
chr2 (475-536)||(30728132-30728192)
chr2 (488-545)||(35541861-35541917)
chr2 (488-545)||(35559199-35559255)
[»] chr7 (16 HSPs)
chr7 (478-543)||(26642595-26642659)
chr7 (456-536)||(48566039-48566119)
chr7 (480-543)||(20537077-20537140)
chr7 (477-536)||(20948472-20948531)
chr7 (320-536)||(34381402-34381619)
chr7 (480-536)||(9195517-9195573)
chr7 (480-536)||(11564446-11564502)
chr7 (480-536)||(26924845-26924901)
chr7 (480-536)||(27087859-27087915)
chr7 (480-536)||(27190386-27190442)
chr7 (480-536)||(27749675-27749731)
chr7 (480-536)||(2133698-2133754)
chr7 (488-536)||(44279389-44279437)
chr7 (489-536)||(40667134-40667181)
chr7 (482-536)||(221890-221944)
chr7 (490-536)||(38189808-38189854)
[»] chr4 (18 HSPs)
chr4 (475-536)||(18691592-18691653)
chr4 (480-536)||(3006184-3006240)
chr4 (480-536)||(22453032-22453088)
chr4 (474-534)||(41548504-41548563)
chr4 (480-543)||(40631038-40631101)
chr4 (480-536)||(7315301-7315357)
chr4 (480-536)||(8087737-8087793)
chr4 (480-532)||(18103845-18103897)
chr4 (488-536)||(36968565-36968613)
chr4 (480-543)||(43140876-43140939)
chr4 (482-536)||(9390379-9390433)
chr4 (481-543)||(45286587-45286649)
chr4 (480-536)||(7882418-7882474)
chr4 (484-536)||(12689556-12689608)
chr4 (488-536)||(29351097-29351145)
chr4 (488-536)||(44234626-44234674)
chr4 (477-536)||(36088668-36088727)
chr4 (318-400)||(21357898-21357980)
[»] scaffold0294 (1 HSPs)
scaffold0294 (480-536)||(13382-13438)
[»] chr3 (12 HSPs)
chr3 (480-536)||(7047912-7047968)
chr3 (480-543)||(30760717-30760780)
chr3 (477-536)||(52787658-52787717)
chr3 (477-536)||(52793877-52793936)
chr3 (488-543)||(55346775-55346830)
chr3 (489-543)||(39233022-39233076)
chr3 (488-543)||(13276206-13276261)
chr3 (488-541)||(41283987-41284040)
chr3 (480-536)||(5331798-5331854)
chr3 (488-536)||(29453455-29453503)
chr3 (488-536)||(41720038-41720086)
chr3 (482-536)||(4606594-4606648)
[»] chr1 (11 HSPs)
chr1 (413-536)||(27275898-27276021)
chr1 (334-535)||(44700001-44700201)
chr1 (456-543)||(7186585-7186673)
chr1 (480-536)||(28728863-28728919)
chr1 (490-536)||(46202454-46202500)
chr1 (488-536)||(14752689-14752737)
chr1 (488-536)||(17171333-17171381)
chr1 (477-536)||(9196209-9196268)
chr1 (477-536)||(20360710-20360769)
chr1 (477-536)||(20550201-20550260)
chr1 (491-536)||(7879982-7880027)
[»] scaffold0048 (1 HSPs)
scaffold0048 (480-543)||(46897-46960)
[»] scaffold0223 (1 HSPs)
scaffold0223 (480-536)||(24743-24799)
[»] scaffold0087 (1 HSPs)
scaffold0087 (480-536)||(8685-8741)
[»] chr6 (7 HSPs)
chr6 (480-536)||(4582239-4582295)
chr6 (480-536)||(23306276-23306332)
chr6 (488-536)||(16802339-16802387)
chr6 (474-533)||(26631242-26631302)
chr6 (474-533)||(26737217-26737277)
chr6 (480-536)||(29730665-29730721)
chr6 (318-379)||(25359630-25359691)
[»] scaffold0084 (1 HSPs)
scaffold0084 (458-536)||(4168-4246)
[»] scaffold0136 (1 HSPs)
scaffold0136 (488-536)||(11091-11139)
[»] scaffold0063 (1 HSPs)
scaffold0063 (488-536)||(1975-2023)
[»] scaffold1147 (1 HSPs)
scaffold1147 (480-529)||(407-456)


Alignment Details
Target: chr5 (Bit Score: 457; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 17 - 629
Target Start/End: Original strand, 26246164 - 26246788
Alignment:
Q  17 aacttgatctaatgaaagttcacctaattgaacattaaaccagatcaaagtatgtttcaatttataatgaagcagtggcgttattttgaacaggttatat 116  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26246164 aacttgatctaatgaaagttcacctaattgaaaattaaaccaggtcaaagtatgtttcaatttataatgaagcagtggcgttattttgaacaggttatat 26246263  T
Q  117 ttaaatacatttttcttagataatgtagtcaagtacactttcacgtttagagaaaagtatcactttttggaagaaaacaacattctaacgtaattaaggt 216  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26246264 ttaaatacatttttcttagataatgcagtcaagtacattttcacgtttagagaaaagtatcactttttggaagaaaacaacattctaacgtaatttaggt 26246363  T
Q  217 ataaaacagaagtaagttagcaaccaaacatataaa---------ttgtcaacatgtcattatcctttt--agattaagctaagtaacttgttcttttgg 305  Q
    |||||||| |||||||||||||||||||||||||||         ||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  26246364 ataaaacaaaagtaagttagcaaccaaacatataaaagtaactctttgtcaacatgtcattatccttttttagattaagctaagtaacttgttcttttgg 26246463  T
Q  306 gtgaatggagtttaaggttttgtttgggagttggattttggagggaaggatagaggaaggaaaggattatgaagagataaatttttgtttgggagattnn 405  Q
    |||||||||| |||||||||  ||||||||||||||||||||||||||||||||  ||||||||| ||| |||||||||||||||||||||||| |||      
T  26246464 gtgaatggagattaaggtttgttttgggagttggattttggagggaaggatagattaaggaaaggtttaagaagagataaatttttgtttgggaaattaa 26246563  T
Q  406 nnnnntcagggaaagattttatggggtttcgaagggctccgtttggtcagattttagagtttctctatattggaggttttgaggggttaaacatacaaat 505  Q
         |||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26246564 aaaaatcagggaaagattttatggggttttgaagggctctatttggtcagattttagagtttctccatattggaggttttgaggggttaaacatacaaat 26246663  T
Q  506 tgtcaaatttgtcctcataataattcaaaatatcaattctggacaaaacgcaa-tcacacattcctcttttccaattcgcgcattctctctcgatctctc 604  Q
    || ||| ||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||    
T  26246664 tgacaattttatcctcataataattcaaaatatcaattctggataaaacgcaattcacacattcctcttttccaattcacgcattctctctcaatctctc 26246763  T
Q  605 tcactgtaacgacaacaacggcggc 629  Q
    |||||||||||||||||||||||||    
T  26246764 tcactgtaacgacaacaacggcggc 26246788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 413 - 536
Target Start/End: Original strand, 6920642 - 6920764
Alignment:
Q  413 agggaaagattttatggggtttcgaagggctccgtttggtcagattttagagtttctctatattggaggttttgaggggttaaacatacaaattgtcaaa 512  Q
    |||||||| ||||  ||||||| |||||||| | ||||  || |||||| |||| | | | ||||| ||||||| |||||||||||||||||||| |||     
T  6920642 agggaaaggttttgaggggttttgaagggcttcatttgtcca-attttaaagttcccccaaattgggggttttggggggttaaacatacaaattgacaat 6920740  T
Q  513 tttgtcctcataataattcaaaat 536  Q
    |||| |||| ||||||||||||||    
T  6920741 tttgccctcttaataattcaaaat 6920764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 317 - 536
Target Start/End: Original strand, 6618339 - 6618559
Alignment:
Q  317 ttaaggttttgtttgggagttggattttggagggaaggatagaggaaggaaaggattatgaagagataaatttttgtttgggagattnnnnnnntca-gg 415  Q
    ||||||||||||||| |||||||||||||||||| |||  |  ||||||||||| ||||| || | ||||   ||||||| ||| ||        || ||    
T  6618339 ttaaggttttgtttgcgagttggattttggaggggagggaaagggaaggaaaggtttatggagtggtaaacccttgtttgcgagttttaaaaaaacaagg 6618438  T
Q  416 gaaagattttatggggtttcgaagggctccgtttggtcagattttagagtttctctatattggagg-ttttgaggggttaaacatacaaattgtcaaatt 514  Q
    ||||| ||||  ||||||| |||||||| | ||||  || |||||| |||| | | | |||||||| ||||| || ||||||||||||||||| ||| ||    
T  6618439 gaaaggttttggggggttttgaagggcttcatttgtcca-attttaaagttcccccaaattggagggttttggggagttaaacatacaaattgacaattt 6618537  T
Q  515 tgtcctcataataattcaaaat 536  Q
    || |||| ||||||||||||||    
T  6618538 tgccctcttaataattcaaaat 6618559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 488 - 536
Target Start/End: Complemental strand, 23101710 - 23101662
Alignment:
Q  488 ggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    |||||||||||||||||||| ||| ||||||||| ||||||||||||||    
T  23101710 ggggttaaacatacaaattgacaattttgtcctcttaataattcaaaat 23101662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 480 - 536
Target Start/End: Complemental strand, 24077435 - 24077379
Alignment:
Q  480 ggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    ||||||| |||||||||||||||||||| ||| |||| |||| ||||||||||||||    
T  24077435 ggttttggggggttaaacatacaaattgacaattttgccctcttaataattcaaaat 24077379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 484 - 534
Target Start/End: Complemental strand, 26251042 - 26250992
Alignment:
Q  484 ttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaa 534  Q
    |||||||||||||||||||||||| ||| |||  |||||||||||||||||    
T  26251042 ttgaggggttaaacatacaaattgacaattttcccctcataataattcaaa 26250992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 488 - 536
Target Start/End: Original strand, 8807267 - 8807315
Alignment:
Q  488 ggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    |||||||||||||||||||| ||| |||| |||| ||||||||||||||    
T  8807267 ggggttaaacatacaaattgacaattttgccctcttaataattcaaaat 8807315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 648 - 680
Target Start/End: Original strand, 26246786 - 26246818
Alignment:
Q  648 ggcgaacggaggtgaacaccggagattccatca 680  Q
    |||||||||||||||||||||||||||||||||    
T  26246786 ggcgaacggaggtgaacaccggagattccatca 26246818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 480 - 543
Target Start/End: Complemental strand, 30592056 - 30591993
Alignment:
Q  480 ggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaatatcaatt 543  Q
    ||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||    
T  30592056 ggttttggggggttaaacatacaaattgacaattttgtcctcataataattcaaaatttcaatt 30591993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 413 - 536
Target Start/End: Original strand, 26849261 - 26849384
Alignment:
Q  413 agggaaagattttatggggtttcgaagggctccgtttggtcagattttagagtttctctatattggagg-ttttgaggggttaaacatacaaattgtcaa 511  Q
    |||||||| ||||  ||||||| |||||||| | ||||  || |||||| |||||| | | |||||||| ||||| |||||||||||||||||||| |||    
T  26849261 agggaaaggttttggggggttttgaagggcttcatttgtcca-attttaaagtttccccaaattggagggttttggggggttaaacatacaaattgacaa 26849359  T
Q  512 atttgtcctcataataattcaaaat 536  Q
     |||| |||||||||||||||||||    
T  26849360 ttttgccctcataataattcaaaat 26849384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 480 - 536
Target Start/End: Complemental strand, 4860121 - 4860065
Alignment:
Q  480 ggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    ||||||| |||||||||||||||||||| ||| ||||||||| ||||||||| ||||    
T  4860121 ggttttggggggttaaacatacaaattgacaattttgtcctcttaataattcgaaat 4860065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 480 - 536
Target Start/End: Original strand, 21257930 - 21257985
Alignment:
Q  480 ggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    ||||||||||| |||||||||||||||| ||| |||| |||||||||||||||||||    
T  21257930 ggttttgaggg-ttaaacatacaaattgacaattttgccctcataataattcaaaat 21257985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 488 - 536
Target Start/End: Original strand, 40672779 - 40672827
Alignment:
Q  488 ggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    |||||||||||||||||||| ||| |||| |||||||||||||||||||    
T  40672779 ggggttaaacatacaaattgacaattttgccctcataataattcaaaat 40672827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 474 - 536
Target Start/End: Original strand, 39679606 - 39679668
Alignment:
Q  474 attggaggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    ||||| ||||||  |||||||||||||||||||| ||| |||| |||| ||||||||||||||    
T  39679606 attgggggttttagggggttaaacatacaaattgacaattttgccctcttaataattcaaaat 39679668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 488 - 536
Target Start/End: Complemental strand, 20162619 - 20162571
Alignment:
Q  488 ggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    ||||||||||||| |||||| ||| |||| |||||||||||||||||||    
T  20162619 ggggttaaacatataaattgacaattttgccctcataataattcaaaat 20162571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 488 - 536
Target Start/End: Original strand, 20194877 - 20194925
Alignment:
Q  488 ggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    ||||||||||||| |||||| ||| |||| |||||||||||||||||||    
T  20194877 ggggttaaacatataaattgacaattttgccctcataataattcaaaat 20194925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 488 - 536
Target Start/End: Original strand, 28714026 - 28714074
Alignment:
Q  488 ggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    |||||||||||||||||||| ||| |||| ||| |||||||||||||||    
T  28714026 ggggttaaacatacaaattgacaattttgcccttataataattcaaaat 28714074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 488 - 536
Target Start/End: Original strand, 28721373 - 28721421
Alignment:
Q  488 ggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    |||||||||||||||||||| ||| |||| ||| |||||||||||||||    
T  28721373 ggggttaaacatacaaattgacaattttgcccttataataattcaaaat 28721421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 488 - 536
Target Start/End: Original strand, 28729015 - 28729063
Alignment:
Q  488 ggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    |||||||||||||||||||| ||| |||| ||| |||||||||||||||    
T  28729015 ggggttaaacatacaaattgacaattttgcccttataataattcaaaat 28729063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 488 - 536
Target Start/End: Complemental strand, 32776867 - 32776819
Alignment:
Q  488 ggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    |||| ||||||||||||||| ||| |||| |||||||||||||||||||    
T  32776867 gggggtaaacatacaaattgacaattttgccctcataataattcaaaat 32776819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 456 - 536
Target Start/End: Original strand, 34322838 - 34322918
Alignment:
Q  456 attttagagtttctctatattggaggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    |||||| |||| | ||||||||| ||||||    |||||||||||||||||| ||| |||| |||| ||||||||||||||    
T  34322838 attttaaagttcccctatattgggggttttagaaggttaaacatacaaattgacaattttgccctcttaataattcaaaat 34322918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 480 - 536
Target Start/End: Complemental strand, 37806947 - 37806891
Alignment:
Q  480 ggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    ||||||| ||||||||||||||||||||  || |||| |||| ||||||||||||||    
T  37806947 ggttttggggggttaaacatacaaattgataattttgccctcttaataattcaaaat 37806891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 5e-18; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 413 - 536
Target Start/End: Original strand, 38975333 - 38975455
Alignment:
Q  413 agggaaagattttatggggtttcgaagggctccgtttggtcagattttagagtttctctatattggaggttttgaggggttaaacatacaaattgtcaaa 512  Q
    |||||||| ||||  ||||||| |||||||| | ||||  || ||||||||||| | ||| ||||| |||||||||||||||||||||||||||| |||     
T  38975333 agggaaaggttttggggggttttgaagggcttcatttgtcca-attttagagttcccctaaattgggggttttgaggggttaaacatacaaattgacaat 38975431  T
Q  513 tttgtcctcataataattcaaaat 536  Q
    |||  |||| ||||||||||||||    
T  38975432 tttaccctcttaataattcaaaat 38975455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 480 - 536
Target Start/End: Complemental strand, 1857775 - 1857719
Alignment:
Q  480 ggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    ||||||| |||||||||||||||||||| ||| |||| |||||||||||||||||||    
T  1857775 ggttttggggggttaaacatacaaattgacaattttgccctcataataattcaaaat 1857719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 484 - 543
Target Start/End: Original strand, 2979850 - 2979909
Alignment:
Q  484 ttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaatatcaatt 543  Q
    |||||||||||||||||||||||| ||| |||| |||| |||||||||||||| ||||||    
T  2979850 ttgaggggttaaacatacaaattgacaattttgccctcttaataattcaaaatttcaatt 2979909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 474 - 536
Target Start/End: Original strand, 25740435 - 25740497
Alignment:
Q  474 attggaggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    ||||| ||||||  |||||||||||||||||||| ||| |||||||||||| |||||||||||    
T  25740435 attgggggtttttgggggttaaacatacaaattgacaattttgtcctcatattaattcaaaat 25740497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 474 - 536
Target Start/End: Original strand, 36555005 - 36555067
Alignment:
Q  474 attggaggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    ||||| ||||||| |||||||||||||||||||| ||| |||| |||| ||||||||||||||    
T  36555005 attgggggttttggggggttaaacatacaaattgacaattttgccctcttaataattcaaaat 36555067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 488 - 536
Target Start/End: Original strand, 1928830 - 1928878
Alignment:
Q  488 ggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    |||||||||||||||||||| ||| |||||||||||||||| |||||||    
T  1928830 ggggttaaacatacaaattgacaattttgtcctcataataactcaaaat 1928878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 480 - 532
Target Start/End: Original strand, 37861455 - 37861507
Alignment:
Q  480 ggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattca 532  Q
    |||||||| |||||||||||||| |||| ||| ||||||||||||||||||||    
T  37861455 ggttttgaagggttaaacatacatattgacaattttgtcctcataataattca 37861507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 456 - 536
Target Start/End: Original strand, 747150 - 747230
Alignment:
Q  456 attttagagtttctctatattggaggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    |||||| |||||| ||| ||||| || |||| || ||||||||||||||||| ||| |||| |||| |||| |||||||||    
T  747150 attttaaagtttccctaaattggggggtttggggcgttaaacatacaaattgacaattttgccctcttaatgattcaaaat 747230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 324 - 400
Target Start/End: Original strand, 11913761 - 11913837
Alignment:
Q  324 tttgtttgggagttggattttggagggaaggatagaggaaggaaaggattatgaagagataaatttttgtttgggag 400  Q
    |||||||| |||||||||||||||||| |||  || |||| |||||| ||||| |||| |||||| || ||||||||    
T  11913761 tttgtttgtgagttggattttggaggggaggggaggggaatgaaaggtttatggagaggtaaattcttttttgggag 11913837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 488 - 536
Target Start/End: Complemental strand, 22336254 - 22336206
Alignment:
Q  488 ggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    |||||||||||||||||||| ||| |||| |||| ||||||||||||||    
T  22336254 ggggttaaacatacaaattgacaattttgccctcttaataattcaaaat 22336206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 480 - 536
Target Start/End: Original strand, 29198709 - 29198765
Alignment:
Q  480 ggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    ||||||| ||||||||| |||||||||| ||| ||| ||||| ||||||||||||||    
T  29198709 ggttttggggggttaaatatacaaattgacaattttatcctcttaataattcaaaat 29198765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 474 - 536
Target Start/End: Original strand, 45167086 - 45167148
Alignment:
Q  474 attggaggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    ||||| ||||||| | || ||||||||||||||| ||| |||| |||| ||||||||||||||    
T  45167086 attgggggttttgggaggataaacatacaaattgacaattttgccctcttaataattcaaaat 45167148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 475 - 536
Target Start/End: Complemental strand, 30728192 - 30728132
Alignment:
Q  475 ttggaggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    |||| ||||||| ||||||||||||||||||||  || ||||||||  ||||||||||||||    
T  30728192 ttgggggttttg-ggggttaaacatacaaattgataattttgtccttttaataattcaaaat 30728132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 488 - 545
Target Start/End: Complemental strand, 35541917 - 35541861
Alignment:
Q  488 ggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaatatcaattct 545  Q
    |||||||||||||||||||| ||| ||| |||| | ||||||||||||| ||||||||    
T  35541917 ggggttaaacatacaaattgacaattttatccttacaataattcaaaat-tcaattct 35541861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 488 - 545
Target Start/End: Complemental strand, 35559255 - 35559199
Alignment:
Q  488 ggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaatatcaattct 545  Q
    |||||||||||||||||||| ||| ||| |||| | ||||||||||||| ||||||||    
T  35559255 ggggttaaacatacaaattgacaattttatccttacaataattcaaaat-tcaattct 35559199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 8e-17; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 478 - 543
Target Start/End: Original strand, 26642595 - 26642659
Alignment:
Q  478 gaggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaatatcaatt 543  Q
    ||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||    
T  26642595 gaggttttg-ggggttaaacatacaaattgacaattttgtcctcataataattcaaaatttcaatt 26642659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 456 - 536
Target Start/End: Original strand, 48566039 - 48566119
Alignment:
Q  456 attttagagtttctctatattggaggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    |||||| |||||||| | ||||| ||||||| ||| |||||||||||||||| ||| |||| |||| ||||||||||||||    
T  48566039 attttaaagtttctccaaattgggggttttgggggattaaacatacaaattgacaattttgccctcttaataattcaaaat 48566119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 480 - 543
Target Start/End: Original strand, 20537077 - 20537140
Alignment:
Q  480 ggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaatatcaatt 543  Q
    ||||||| |||||||||||||||||||| ||| |||| |||| |||||||||||||| ||||||    
T  20537077 ggttttggggggttaaacatacaaattgacaattttgccctcttaataattcaaaatttcaatt 20537140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 477 - 536
Target Start/End: Original strand, 20948472 - 20948531
Alignment:
Q  477 ggaggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    |||||||||| |||||||||||||||||||| ||| ||||  ||||||||||||||||||    
T  20948472 ggaggttttggggggttaaacatacaaattgacaattttgctctcataataattcaaaat 20948531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 320 - 536
Target Start/End: Complemental strand, 34381619 - 34381402
Alignment:
Q  320 aggttttgtttgggagttggattttggagggaaggatagaggaaggaaaggattatgaagagataaatttttgtttgggagattnnnnnnntca-gggaa 418  Q
    |||||||||||| |||||||||||||||||  |||  |  ||||||||||| ||||| || | ||||| |||||||| ||| ||        || |||||    
T  34381619 aggttttgtttgcgagttggattttggaggagaggggaagggaaggaaaggtttatggagtggtaaatctttgtttgcgagttttaaaaaaacaagggaa 34381520  T
Q  419 agattttatggggtttcgaagggctccgtttggtcagattttagagtttctctatattggagg-ttttgaggggttaaacatacaaattgtcaaatttgt 517  Q
    || ||||  ||||||| |||||||| | ||||  || |||||| |||| | | | |||||||| ||||| |||||||||||||||||||| ||| |||      
T  34381519 aggttttggggggttttgaagggcttcatttgtcca-attttaaagttcccccaaattggagggttttggggggttaaacatacaaattgacaattttac 34381421  T
Q  518 cctcataataattcaaaat 536  Q
    |||| ||||||||||||||    
T  34381420 cctcttaataattcaaaat 34381402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 480 - 536
Target Start/End: Complemental strand, 9195573 - 9195517
Alignment:
Q  480 ggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    ||||||| |||||||||||||||||||| ||| |||| |||| ||||||||||||||    
T  9195573 ggttttggggggttaaacatacaaattgacaattttgccctcttaataattcaaaat 9195517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 480 - 536
Target Start/End: Complemental strand, 11564502 - 11564446
Alignment:
Q  480 ggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    ||||||| |||||||||||||||||||| ||| |||| |||| ||||||||||||||    
T  11564502 ggttttggggggttaaacatacaaattgacaattttgccctcttaataattcaaaat 11564446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 480 - 536
Target Start/End: Complemental strand, 26924901 - 26924845
Alignment:
Q  480 ggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    ||||||| |||||||||||||||||||| ||| |||| |||| ||||||||||||||    
T  26924901 ggttttggggggttaaacatacaaattgacaattttgccctcttaataattcaaaat 26924845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 480 - 536
Target Start/End: Complemental strand, 27087915 - 27087859
Alignment:
Q  480 ggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    ||||||| |||||||||||||||||||| ||| |||| |||| ||||||||||||||    
T  27087915 ggttttgtggggttaaacatacaaattgacaattttgccctcttaataattcaaaat 27087859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 480 - 536
Target Start/End: Original strand, 27190386 - 27190442
Alignment:
Q  480 ggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    ||||||| |||||||||||||||||||| ||| |||| |||| ||||||||||||||    
T  27190386 ggttttgtggggttaaacatacaaattgacaattttgccctcttaataattcaaaat 27190442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 480 - 536
Target Start/End: Complemental strand, 27749731 - 27749675
Alignment:
Q  480 ggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    ||||||| |||||||||||||||||||| ||| |||| |||| ||||||||||||||    
T  27749731 ggttttggggggttaaacatacaaattgacaattttgccctcttaataattcaaaat 27749675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 480 - 536
Target Start/End: Complemental strand, 2133754 - 2133698
Alignment:
Q  480 ggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    ||||||| |||||||||||||| ||||| ||| |||| |||| ||||||||||||||    
T  2133754 ggttttggggggttaaacatactaattgacaattttgccctcttaataattcaaaat 2133698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 488 - 536
Target Start/End: Original strand, 44279389 - 44279437
Alignment:
Q  488 ggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    ||||||||||||| |||||| ||| |||| |||||||||||||||||||    
T  44279389 ggggttaaacatataaattgacaattttgccctcataataattcaaaat 44279437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 489 - 536
Target Start/End: Complemental strand, 40667181 - 40667134
Alignment:
Q  489 gggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    ||||||||||||||||||| ||| |||| ||| |||||||||||||||    
T  40667181 gggttaaacatacaaattgacaattttgcccttataataattcaaaat 40667134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 482 - 536
Target Start/End: Original strand, 221890 - 221944
Alignment:
Q  482 ttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    ||||| |||||||||||||||||||| ||| |||| |||| | ||||||||||||    
T  221890 ttttggggggttaaacatacaaattgacaattttgccctcgtcataattcaaaat 221944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 490 - 536
Target Start/End: Original strand, 38189808 - 38189854
Alignment:
Q  490 ggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    ||||||||||||||||||  || |||||||||||| |||||||||||    
T  38189808 ggttaaacatacaaattgataattttgtcctcatactaattcaaaat 38189854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 475 - 536
Target Start/End: Complemental strand, 18691653 - 18691592
Alignment:
Q  475 ttggaggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    |||||||||||| |||||||||||||| ||||| ||| |||| |||||||||||||||||||    
T  18691653 ttggaggttttggggggttaaacatactaattgacaattttgccctcataataattcaaaat 18691592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 480 - 536
Target Start/End: Complemental strand, 3006240 - 3006184
Alignment:
Q  480 ggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    |||||||||||||||||||||||||||| ||| |||| |||| ||||||||||||||    
T  3006240 ggttttgaggggttaaacatacaaattgacaattttgccctcttaataattcaaaat 3006184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 480 - 536
Target Start/End: Complemental strand, 22453088 - 22453032
Alignment:
Q  480 ggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    ||||||| |||||||||||||||||||| ||| ||||||||| ||||||||||||||    
T  22453088 ggttttggggggttaaacatacaaattgacaattttgtcctcttaataattcaaaat 22453032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 474 - 534
Target Start/End: Original strand, 41548504 - 41548563
Alignment:
Q  474 attggaggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaa 534  Q
    ||||| ||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||    
T  41548504 attgggggttttg-ggggttaaacatacaaattgacaattttgtcctcataataattcaaa 41548563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 480 - 543
Target Start/End: Original strand, 40631038 - 40631101
Alignment:
Q  480 ggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaatatcaatt 543  Q
    ||||||| |||||||||||||||||||| ||| |||| |||| |||||||||||||| ||||||    
T  40631038 ggttttggggggttaaacatacaaattgacaattttgccctcttaataattcaaaatttcaatt 40631101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 480 - 536
Target Start/End: Complemental strand, 7315357 - 7315301
Alignment:
Q  480 ggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    ||||||| |||||||||||||||||||| ||| |||| |||| ||||||||||||||    
T  7315357 ggttttggggggttaaacatacaaattgacaattttgccctcttaataattcaaaat 7315301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 480 - 536
Target Start/End: Complemental strand, 8087793 - 8087737
Alignment:
Q  480 ggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    ||||||| |||||||||||||||||||| ||| |||| |||| ||||||||||||||    
T  8087793 ggttttggggggttaaacatacaaattgacaattttgccctcttaataattcaaaat 8087737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 480 - 532
Target Start/End: Original strand, 18103845 - 18103897
Alignment:
Q  480 ggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattca 532  Q
    |||||||| |||||||||||||| |||| ||| ||||||||||||||||||||    
T  18103845 ggttttgaagggttaaacatacatattgacaattttgtcctcataataattca 18103897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 488 - 536
Target Start/End: Original strand, 36968565 - 36968613
Alignment:
Q  488 ggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    |||||||||||||||||||| ||| ||||||||| ||||||||||||||    
T  36968565 ggggttaaacatacaaattgacaattttgtcctcttaataattcaaaat 36968613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 480 - 543
Target Start/End: Complemental strand, 43140939 - 43140876
Alignment:
Q  480 ggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaatatcaatt 543  Q
    ||||||| ||| |||||||||||||||| ||| |||||| |||||||||||||| || ||||||    
T  43140939 ggttttgggggattaaacatacaaattgacaattttgtcttcataataattcaatatttcaatt 43140876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 482 - 536
Target Start/End: Original strand, 9390379 - 9390433
Alignment:
Q  482 ttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    ||||| |||||||||||||||||||| ||| |||| |||| ||||||||||||||    
T  9390379 ttttggggggttaaacatacaaattgacaattttgccctcttaataattcaaaat 9390433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 481 - 543
Target Start/End: Original strand, 45286587 - 45286649
Alignment:
Q  481 gttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaatatcaatt 543  Q
    |||||| ||| ||||||||||||||||  || ||||||||| |||||||||||||| ||||||    
T  45286587 gttttgggggattaaacatacaaattgataattttgtcctcgtaataattcaaaatttcaatt 45286649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 480 - 536
Target Start/End: Complemental strand, 7882474 - 7882418
Alignment:
Q  480 ggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    ||||||| |||||||||||||||||||| ||| ||||  ||| ||||||||||||||    
T  7882474 ggttttggggggttaaacatacaaattgacaattttgctctcttaataattcaaaat 7882418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 484 - 536
Target Start/End: Complemental strand, 12689608 - 12689556
Alignment:
Q  484 ttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    |||||||||||||||||||||||| | | |||| |||| ||||||||||||||    
T  12689608 ttgaggggttaaacatacaaattgacgattttgccctcttaataattcaaaat 12689556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 488 - 536
Target Start/End: Original strand, 29351097 - 29351145
Alignment:
Q  488 ggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    |||||||||||||||||||| ||| |||| |||| ||||||||||||||    
T  29351097 ggggttaaacatacaaattgacaattttgccctcttaataattcaaaat 29351145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 488 - 536
Target Start/End: Complemental strand, 44234674 - 44234626
Alignment:
Q  488 ggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    |||||||||||||||||||| ||| |||| |||| ||||||||||||||    
T  44234674 ggggttaaacatacaaattgacaattttgccctcttaataattcaaaat 44234626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 477 - 536
Target Start/End: Original strand, 36088668 - 36088727
Alignment:
Q  477 ggaggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    ||||||||||  | ||||||||||||||||| |||||||  ||||| |||||||||||||    
T  36088668 ggaggttttggagagttaaacatacaaattgacaaatttaccctcacaataattcaaaat 36088727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 318 - 400
Target Start/End: Complemental strand, 21357980 - 21357898
Alignment:
Q  318 taaggttttgtttgggagttggattttggagggaaggatagaggaaggaaaggattatgaagagataaatttttgtttgggag 400  Q
    |||||||||||||| ||||||| |||||||||| ||   || ||||||||||| ||||| |||| ||||   |||||||||||    
T  21357980 taaggttttgtttgcgagttgggttttggaggggagcggaggggaaggaaaggcttatggagaggtaaacccttgtttgggag 21357898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 480 - 536
Target Start/End: Original strand, 13382 - 13438
Alignment:
Q  480 ggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    ||||||| |||||||||||||||||||| ||| |||| |||||||||||||||||||    
T  13382 ggttttggggggttaaacatacaaattgacaattttgccctcataataattcaaaat 13438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 480 - 536
Target Start/End: Original strand, 7047912 - 7047968
Alignment:
Q  480 ggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    ||||||| |||||||||||||||||||| ||| ||||||||| ||||||||||||||    
T  7047912 ggttttggggggttaaacatacaaattgacaattttgtcctcttaataattcaaaat 7047968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 480 - 543
Target Start/End: Complemental strand, 30760780 - 30760717
Alignment:
Q  480 ggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaatatcaatt 543  Q
    ||||||| |||||||||||||||||||| ||| |||| |||||| |||||||||||| ||||||    
T  30760780 ggttttggggggttaaacatacaaattgacaattttgccctcatgataattcaaaatttcaatt 30760717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 477 - 536
Target Start/End: Complemental strand, 52787717 - 52787658
Alignment:
Q  477 ggaggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    |||||||||| |||||||||||||||||||| ||| |||| |||| ||||||||||||||    
T  52787717 ggaggttttggggggttaaacatacaaattgacaattttgccctcttaataattcaaaat 52787658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 477 - 536
Target Start/End: Complemental strand, 52793936 - 52793877
Alignment:
Q  477 ggaggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    |||||||||| |||||||||||||||||||| ||| |||| |||| ||||||||||||||    
T  52793936 ggaggttttggggggttaaacatacaaattgacaattttgccctcttaataattcaaaat 52793877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 488 - 543
Target Start/End: Original strand, 55346775 - 55346830
Alignment:
Q  488 ggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaatatcaatt 543  Q
    |||||||||||||||||||| ||| |||| ||||||||||||||||||| ||||||    
T  55346775 ggggttaaacatacaaattgacaattttgccctcataataattcaaaatttcaatt 55346830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 489 - 543
Target Start/End: Complemental strand, 39233076 - 39233022
Alignment:
Q  489 gggttaaacatacaaattgtcaaatttgtcctcataataattcaaaatatcaatt 543  Q
    ||||||||||||||||||| ||| ||| |||||||||||||||||||| ||||||    
T  39233076 gggttaaacatacaaattgacaattttatcctcataataattcaaaatttcaatt 39233022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 488 - 543
Target Start/End: Original strand, 13276206 - 13276261
Alignment:
Q  488 ggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaatatcaatt 543  Q
    |||||||||||||||||||| ||| |||| |||| |||||||||||||| ||||||    
T  13276206 ggggttaaacatacaaattgacaattttgccctcttaataattcaaaatttcaatt 13276261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 488 - 541
Target Start/End: Original strand, 41283987 - 41284040
Alignment:
Q  488 ggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaatatcaa 541  Q
    |||||||||||||||||||| ||| |||  ||||||||||||||||||| ||||    
T  41283987 ggggttaaacatacaaattgacaattttaccctcataataattcaaaatttcaa 41284040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 480 - 536
Target Start/End: Original strand, 5331798 - 5331854
Alignment:
Q  480 ggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    ||||||| ||||||||||||||||| || ||| |||| |||| ||||||||||||||    
T  5331798 ggttttggggggttaaacatacaaaatgacaattttgccctcttaataattcaaaat 5331854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 488 - 536
Target Start/End: Complemental strand, 29453503 - 29453455
Alignment:
Q  488 ggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    |||||||||||||||||||| ||| |||| |||| ||||||||||||||    
T  29453503 ggggttaaacatacaaattgacaattttgccctcttaataattcaaaat 29453455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 488 - 536
Target Start/End: Complemental strand, 41720086 - 41720038
Alignment:
Q  488 ggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    |||||||||||||||||||| ||| |||| |||| ||||||||||||||    
T  41720086 ggggttaaacatacaaattgacaattttgccctcttaataattcaaaat 41720038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 482 - 536
Target Start/End: Complemental strand, 4606648 - 4606594
Alignment:
Q  482 ttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    ||||| |||||||||||||||||||| ||| |||| |||| |||||| |||||||    
T  4606648 ttttggggggttaaacatacaaattgacaattttgccctcttaataactcaaaat 4606594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 413 - 536
Target Start/End: Complemental strand, 27276021 - 27275898
Alignment:
Q  413 agggaaagattttatggggtttcgaagggctccgtttggtcagattttagagtttctctatattggagg-ttttgaggggttaaacatacaaattgtcaa 511  Q
    |||||||||||||  ||||||| |||||||| | |||| ||| |||||| |||| | | | ||||| || ||||| |||||||||||||||||||| |||    
T  27276021 agggaaagattttggggggttttgaagggcttcatttgttca-attttaaagttcccccaaattggggggttttggggggttaaacatacaaattgacaa 27275923  T
Q  512 atttgtcctcataataattcaaaat 536  Q
     |||| |||| ||||||||||||||    
T  27275922 ttttgccctcttaataattcaaaat 27275898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 334 - 535
Target Start/End: Complemental strand, 44700201 - 44700001
Alignment:
Q  334 agttggattttggagggaaggatagaggaaggaaaggattatgaagagataaatttttgtttgggagattnnnnnnntcagggaaagattttatggggtt 433  Q
    |||||| |||||||||| |||  |  ||||||||||| ||||| |||| |||| | ||||||||||| ||         |||||||| ||||  ||||||    
T  44700201 agttgggttttggaggggaggggaagggaaggaaaggcttatggagaggtaaactcttgtttgggagttttaaaaaaatagggaaaggttttggggggtt 44700102  T
Q  434 tcgaagggctccgtttggtcagattttagagtttctctatattggaggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaa 533  Q
    | |||||||| | ||||  || |||||| |||| | | | ||||| ||| ||| |||||||||||||||||||| ||| ||||| |||||||||||||||    
T  44700101 ttgaagggcttcatttgtcca-attttaaagttcccccaaattgggggtattggggggttaaacatacaaattgacaattttgtactcataataattcaa 44700003  T
Q  534 aa 535  Q
    ||    
T  44700002 aa 44700001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 456 - 543
Target Start/End: Original strand, 7186585 - 7186673
Alignment:
Q  456 attttagagtttctctatattggaggttttgagggg-ttaaacatacaaattgtcaaatttgtcctcataataattcaaaatatcaatt 543  Q
    |||||| |||| | ||| |||||||| ||| ||||| |||||||||||||||| ||| ||||| || ||||||||||||||| ||||||    
T  7186585 attttaaagttcccctaaattggagggttttagggggttaaacatacaaattgacaattttgttcttataataattcaaaatttcaatt 7186673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 480 - 536
Target Start/End: Complemental strand, 28728919 - 28728863
Alignment:
Q  480 ggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    ||||||| |||||||||||||||||||| ||| |||| |||| ||||||||||||||    
T  28728919 ggttttggggggttaaacatacaaattgacaattttgccctcttaataattcaaaat 28728863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 490 - 536
Target Start/End: Complemental strand, 46202500 - 46202454
Alignment:
Q  490 ggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    |||||||||||||||||| ||| |||||||||||| |||||||||||    
T  46202500 ggttaaacatacaaattgacaattttgtcctcatactaattcaaaat 46202454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 488 - 536
Target Start/End: Original strand, 14752689 - 14752737
Alignment:
Q  488 ggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    |||||||||||||||||||| ||| |||| |||| ||||||||||||||    
T  14752689 ggggttaaacatacaaattgacaattttgccctcttaataattcaaaat 14752737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 488 - 536
Target Start/End: Complemental strand, 17171381 - 17171333
Alignment:
Q  488 ggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    |||||||||||||||||||  ||| |||| |||||||||||||||||||    
T  17171381 ggggttaaacatacaaattaacaattttgccctcataataattcaaaat 17171333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 477 - 536
Target Start/End: Original strand, 9196209 - 9196268
Alignment:
Q  477 ggaggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    |||| |||||||||||||||||||||||||| ||| ||||   || ||||||||||||||    
T  9196209 ggagattttgaggggttaaacatacaaattgacaattttgcaatcttaataattcaaaat 9196268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 477 - 536
Target Start/End: Original strand, 20360710 - 20360769
Alignment:
Q  477 ggaggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    ||||||||||  ||||||||||||||||||| ||| |||  |||| ||||||||||||||    
T  20360710 ggaggttttggagggttaaacatacaaattgacaattttaccctcttaataattcaaaat 20360769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 477 - 536
Target Start/End: Complemental strand, 20550260 - 20550201
Alignment:
Q  477 ggaggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    ||||||||||  ||||||||||||||||||| ||| |||  |||| ||||||||||||||    
T  20550260 ggaggttttggagggttaaacatacaaattgacaattttaccctcttaataattcaaaat 20550201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 491 - 536
Target Start/End: Complemental strand, 7880027 - 7879982
Alignment:
Q  491 gttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    ||||||||||||||||| ||| |||| |||| ||||||||||||||    
T  7880027 gttaaacatacaaattgacaattttgccctcttaataattcaaaat 7879982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 480 - 543
Target Start/End: Complemental strand, 46960 - 46897
Alignment:
Q  480 ggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaatatcaatt 543  Q
    ||||||| |||||||||||||||||||| ||| |||| |||| |||||||||||||| ||||||    
T  46960 ggttttggggggttaaacatacaaattgacaattttgccctcttaataattcaaaatttcaatt 46897  T

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Target: scaffold0223 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 480 - 536
Target Start/End: Complemental strand, 24799 - 24743
Alignment:
Q  480 ggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    ||||||| ||| |||||||||||||||| ||| |||| |||||||||||||||||||    
T  24799 ggttttgtgggattaaacatacaaattgacaattttgccctcataataattcaaaat 24743  T

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Target: scaffold0087 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 480 - 536
Target Start/End: Original strand, 8685 - 8741
Alignment:
Q  480 ggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    ||||||| |||||||||||||||||||| ||| |||| |||| ||||||||||||||    
T  8685 ggttttggggggttaaacatacaaattgacaattttgccctcttaataattcaaaat 8741  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 480 - 536
Target Start/End: Original strand, 4582239 - 4582295
Alignment:
Q  480 ggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    ||||||| |||||||||||||||||||| ||| |||| |||| ||||||||||||||    
T  4582239 ggttttggggggttaaacatacaaattgacaattttgccctcttaataattcaaaat 4582295  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 480 - 536
Target Start/End: Complemental strand, 23306332 - 23306276
Alignment:
Q  480 ggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    ||||||| |||||||||||||||||||| ||| |||| |||| ||||||||||||||    
T  23306332 ggttttggggggttaaacatacaaattgacaattttgccctcttaataattcaaaat 23306276  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 488 - 536
Target Start/End: Original strand, 16802339 - 16802387
Alignment:
Q  488 ggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    |||||||||||||||||||| ||| |||| |||| ||||||||||||||    
T  16802339 ggggttaaacatacaaattgacaattttgccctcttaataattcaaaat 16802387  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 474 - 533
Target Start/End: Complemental strand, 26631302 - 26631242
Alignment:
Q  474 attggagg-ttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaa 533  Q
    |||||||| ||||| |||||||||||||||||||| ||| |||| |||| |||||||||||    
T  26631302 attggaggattttggggggttaaacatacaaattgacaattttgccctcttaataattcaa 26631242  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 474 - 533
Target Start/End: Complemental strand, 26737277 - 26737217
Alignment:
Q  474 attggagg-ttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaa 533  Q
    |||||||| ||||| |||||||||||||||||||| ||| |||| |||| |||||||||||    
T  26737277 attggaggattttggggggttaaacatacaaattgacaattttgccctcttaataattcaa 26737217  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 480 - 536
Target Start/End: Original strand, 29730665 - 29730721
Alignment:
Q  480 ggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    ||||||| ||||||||||||| |||||| ||| ||||||||| ||||||||| ||||    
T  29730665 ggttttggggggttaaacatataaattgacaattttgtcctcttaataattccaaat 29730721  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 379
Target Start/End: Original strand, 25359630 - 25359691
Alignment:
Q  318 taaggttttgtttgggagttggattttggagggaaggatagaggaaggaaaggattatgaag 379  Q
    |||||||||||||| |||||||||||||||||| |||  |  | ||||||||| ||||||||    
T  25359630 taaggttttgtttgcgagttggattttggaggggaggggaaggaaaggaaaggcttatgaag 25359691  T

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Target: scaffold0084 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 458 - 536
Target Start/End: Original strand, 4168 - 4246
Alignment:
Q  458 tttagagtttctctatattggaggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    |||| |||||| ||| ||| | ||||||| |||||||||||||||||||| | | |||||||| ||||||| |||||||    
T  4168 tttaaagtttccctaaatttggggttttggggggttaaacatacaaattgacgattttgtccttataataaatcaaaat 4246  T

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Target: scaffold0136 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 488 - 536
Target Start/End: Original strand, 11091 - 11139
Alignment:
Q  488 ggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    |||||||||||||||||||| ||| |||| |||| ||||||||||||||    
T  11091 ggggttaaacatacaaattgacaattttgccctcttaataattcaaaat 11139  T

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Target: scaffold0063 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 488 - 536
Target Start/End: Original strand, 1975 - 2023
Alignment:
Q  488 ggggttaaacatacaaattgtcaaatttgtcctcataataattcaaaat 536  Q
    |||||||||||||||||||| ||| |||| |||| ||||||||||||||    
T  1975 ggggttaaacatacaaattgacaattttgccctcttaataattcaaaat 2023  T

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Target: scaffold1147 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1147
Description:

Target: scaffold1147; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 480 - 529
Target Start/End: Complemental strand, 456 - 407
Alignment:
Q  480 ggttttgaggggttaaacatacaaattgtcaaatttgtcctcataataat 529  Q
    ||||||| | |||||||||||||||||| ||| |||| ||||||||||||    
T  456 ggttttgtgtggttaaacatacaaattgacaattttgccctcataataat 407  T

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