View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3266_low_21 (Length: 249)
Name: NF3266_low_21
Description: NF3266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3266_low_21 |
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| [»] scaffold0085 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 47836993 - 47837231
Alignment:
| Q |
1 |
attacagagtgccttaaatgactattattaccatggtttcaaatcgcggtccacatctgcaactgcgaccgctaatatcgctgatgtggtagcctctaca |
100 |
Q |
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| T |
47836993 |
attacagtgtgccttaaatgactattattaccatggtttcaaatcgcggtccacatctgcaactgcgaccgctaatatcgctgatgtggtagcctctaca |
47837092 |
T |
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| Q |
101 |
tcgtcatcgcaattgcagtgtgatcttaaatcacttgtatgcttgcatcataactgcatcaaacgatttcggccatgtttgttcaaatcttctcaccaaa |
200 |
Q |
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| T |
47837093 |
tcgtcatcgcaattgcagtgtgatctaaaatcacttgtatgcttgcatcataactgcatcaaacaatttcggccatgtttgttcaaatcttctcaccaaa |
47837192 |
T |
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| Q |
201 |
acataacatttcagaaccccaaatgtcagtctacttcat |
239 |
Q |
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| T |
47837193 |
atataaaatttcagaaccccaaatgtcagtctacttcat |
47837231 |
T |
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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 199
Target Start/End: Complemental strand, 38750884 - 38750795
Alignment:
| Q |
110 |
caattgcagtgtgatcttaaatcacttgtatgcttgcatcataactgcatcaaacgatttcggccatgtttgttcaaatcttctcaccaa |
199 |
Q |
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| T |
38750884 |
caatagcattgtgatcttcaatcacgtgtatggtcgcatcggaactgcatcacacgattttggtaatgtttgttcaaatcttctcaccaa |
38750795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0085 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 195
Target Start/End: Complemental strand, 49972 - 49885
Alignment:
| Q |
108 |
cgcaattgcagtgtgatcttaaatcacttgtatgcttgcatcataactgcatcaaacgatttcggccatgtttgttcaaatcttctca |
195 |
Q |
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| T |
49972 |
cgcaagtgtagtgttatcttcaatcatgtgtatgggcgcatcgtaactgcataacacgatttcggccatgtttgttcaaaccttctca |
49885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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