View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3266_low_4 (Length: 569)

Name: NF3266_low_4
Description: NF3266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3266_low_4
NF3266_low_4
[»] chr6 (1 HSPs)
chr6 (20-561)||(26553661-26554208)
[»] chr3 (3 HSPs)
chr3 (472-558)||(25121071-25121156)
chr3 (183-217)||(23271937-23271971)
chr3 (177-217)||(11252054-11252094)
[»] chr8 (1 HSPs)
chr8 (464-561)||(22192105-22192202)
[»] chr1 (1 HSPs)
chr1 (180-217)||(28663678-28663715)
[»] chr7 (3 HSPs)
chr7 (175-222)||(38134331-38134378)
chr7 (175-217)||(30813873-30813915)
chr7 (464-549)||(37190293-37190378)
[»] chr5 (2 HSPs)
chr5 (175-217)||(27932311-27932353)
chr5 (172-217)||(35252259-35252304)
[»] chr4 (1 HSPs)
chr4 (184-217)||(18575984-18576017)
[»] chr2 (2 HSPs)
chr2 (172-217)||(33153489-33153534)
chr2 (165-217)||(10535686-10535738)


Alignment Details
Target: chr6 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 20 - 561
Target Start/End: Original strand, 26553661 - 26554208
Alignment:
Q  20 ctacgttggtttgtttttctttctatcatgatatcttcgttgaagcacaaatacatagatgaacaccgacacgacactga------tatgccgacattaa 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||      ||||||||||||||    
T  26553661 ctacgttggtttgtttttctttctatcatgatatcttcgttgaagcacgaatacatagatgaacaccgacacgacactgacactgatatgccgacattaa 26553760  T
Q  114 taataatttnnnnnnntcacataaatcaatgtatttgtgtatcaaaaaccgatgtgtttctgacatcagaacacgcctaattcgaggagtgtatgtgctt 213  Q
    |||||||||       |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26553761 taataatttaaaaaaatcacataaatcaatgtatttgtgtatcaaaaacctatgtgtgtctgacatcagaacacgcctaattcgaggagtgtatgtgctt 26553860  T
Q  214 cataacttcggcctgatgtgtattgcccacctcctatgtggcttgtactgtagtgcctcttggttttcaaacttgttttgccttgcctcttgtatcattg 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26553861 cataacttcggcctgatgtgtattgcccacctcctatgtggcttgtactgtagtgcctcttggttttcaaacttgttttgccttgcctcttgtatcattg 26553960  T
Q  314 ccttgtatactcttggttggagtatacacctactcttttttctttctatatattaatttagcaactcaaaataatgtagacatttaatcagattgattca 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26553961 ccttgtatactcttggttggagtatacacctactcttttttctttctatatattaatttagcaactcaaaataatgtagacatttaatcagattgattca 26554060  T
Q  414 ttttcatgtgtgcattgttgctaatgctaactagaaagttgttattacagtttgctttttcaaagtacttttaaagtttgtcacattctcagagaaggga 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  26554061 ttttcatgtgtgcattgttgctaatgctaactagaaagttgttattacagtttgcttcttcaaagtacttttacagtttgtcacattctcagagaaggga 26554160  T
Q  514 atcaatatgcagatttccttccaaagctcagagcttcttctgatgatg 561  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26554161 atcaatatgcagatttccttccaaagctcagagcttcttctgatgatg 26554208  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 472 - 558
Target Start/End: Complemental strand, 25121156 - 25121071
Alignment:
Q  472 ttcaaagtacttttaaagtttgtcacattctcagagaagggaatcaatatgcagatttccttccaaagctcagagcttcttctgatg 558  Q
    ||||||||||| |||  ||| |||||| |||||||||||| || |||||||  ||||||||| |||||||| |||||||||||||||    
T  25121156 ttcaaagtactgttacggttggtcacactctcagagaagg-aaccaatatgtggatttccttacaaagctcggagcttcttctgatg 25121071  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 217
Target Start/End: Complemental strand, 23271971 - 23271937
Alignment:
Q  183 aacacgcctaattcgaggagtgtatgtgcttcata 217  Q
    ||||||||||||| |||||||||||||||||||||    
T  23271971 aacacgcctaatttgaggagtgtatgtgcttcata 23271937  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 11252054 - 11252094
Alignment:
Q  177 catcagaacacgcctaattcgaggagtgtatgtgcttcata 217  Q
    |||| ||||||||||||| |||||||||| |||||||||||    
T  11252054 catcggaacacgcctaatccgaggagtgtctgtgcttcata 11252094  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 464 - 561
Target Start/End: Original strand, 22192105 - 22192202
Alignment:
Q  464 tttgctttttcaaagtacttttaaagtttgtcacattctcagagaagggaatcaatatgcagatttccttccaaagctcagagcttcttctgatgatg 561  Q
    |||||||  |||||||| | ||| ||||||||||| |||||||||| |||| |||| ||| ||||| ||| | ||||||  |||||||||| ||||||    
T  22192105 tttgcttcatcaaagtattgttacagtttgtcacactctcagagaatggaaccaatgtgcggattttcttgccaagctcgaagcttcttctaatgatg 22192202  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 28663678 - 28663715
Alignment:
Q  180 cagaacacgcctaattcgaggagtgtatgtgcttcata 217  Q
    |||||||||||||||||||||||||| |||||||||||    
T  28663678 cagaacacgcctaattcgaggagtgtctgtgcttcata 28663715  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 38134378 - 38134331
Alignment:
Q  175 gacatcagaacacgcctaattcgaggagtgtatgtgcttcataacttc 222  Q
    |||||| | ||||||||||| |||||||||||||||||||||| ||||    
T  38134378 gacatcgggacacgcctaatccgaggagtgtatgtgcttcatagcttc 38134331  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 30813873 - 30813915
Alignment:
Q  175 gacatcagaacacgcctaattcgaggagtgtatgtgcttcata 217  Q
    |||||||||||||||||||| ||||||||||  ||||||||||    
T  30813873 gacatcagaacacgcctaatccgaggagtgtccgtgcttcata 30813915  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 549
Target Start/End: Complemental strand, 37190378 - 37190293
Alignment:
Q  464 tttgctttttcaaagtacttttaaagtttgtcacattctcagagaagggaatcaatatgcagatttccttccaaagctcagagctt 549  Q
    ||||||| || |||||||| ||| ||||||||||| |||||||||| ||||  |||||   ||||| ||| |||||||| ||||||    
T  37190378 tttgcttctttaaagtactgttacagtttgtcacactctcagagaacggaagtaatatatggattttcttgcaaagctcggagctt 37190293  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 27932311 - 27932353
Alignment:
Q  175 gacatcagaacacgcctaattcgaggagtgtatgtgcttcata 217  Q
    |||| ||| |||||||||||||||||||||| |||||||||||    
T  27932311 gacaccaggacacgcctaattcgaggagtgtttgtgcttcata 27932353  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 35252304 - 35252259
Alignment:
Q  172 tctgacatcagaacacgcctaattcgaggagtgtatgtgcttcata 217  Q
    ||||||| | ||||||||||||| |||||||| |||||||||||||    
T  35252304 tctgacacctgaacacgcctaatccgaggagtatatgtgcttcata 35252259  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 217
Target Start/End: Complemental strand, 18576017 - 18575984
Alignment:
Q  184 acacgcctaattcgaggagtgtatgtgcttcata 217  Q
    ||||||||||||||| ||||||||||||||||||    
T  18576017 acacgcctaattcgatgagtgtatgtgcttcata 18575984  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 33153489 - 33153534
Alignment:
Q  172 tctgacatcagaacacgcctaattcgaggagtgtatgtgcttcata 217  Q
    ||||||||| | ||||| ||||||| ||||||||||||||||||||    
T  33153489 tctgacatcgggacacgtctaattcaaggagtgtatgtgcttcata 33153534  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 10535738 - 10535686
Alignment:
Q  165 atgtgtttctgacatcagaacacgcctaattcgaggagtgtatgtgcttcata 217  Q
    |||||| ||||||| ||| ||||||||||| ||||||||||  ||||||||||    
T  10535738 atgtgtgtctgacaccaggacacgcctaatccgaggagtgttcgtgcttcata 10535686  T

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