View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3266_low_7 (Length: 405)
Name: NF3266_low_7
Description: NF3266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3266_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 68 - 391
Target Start/End: Complemental strand, 54987967 - 54987645
Alignment:
| Q |
68 |
ttggatggaaaaggataatgatcaaactccactgagaatgagaatgctccaagagcataggtagtgattaagaaaaagagtagtagtatctccatagata |
167 |
Q |
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| T |
54987967 |
ttggatggaaaaggataatgatcaaactcctctgagaatgagaatgctccaagagcataggtagtgattaagaaaaagagtagcagtatctccatagata |
54987868 |
T |
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| Q |
168 |
ctgctttctgaaaagtagataacttcaaactaattgatactctcaaatcaattaatgtcaaagaaaatttcatattcttaaacaccatagatactgttta |
267 |
Q |
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| T |
54987867 |
ctgctttctgaaaagtagataacttcaaactaattgatgctctcaactcaattaatgtcaaagaaaatttcatattctt-aacaccatagatactgttta |
54987769 |
T |
|
| Q |
268 |
aatgattgaagaccaactctgcaccaaccactgggacccaaaagccaattccagtactaatatttcaccaaaatttatttcacccaaaggaaatgtatga |
367 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54987768 |
aatgattgaagaccaactctgcaccaaccaccgggacccaaaagccaattccagtactaatatttcaccaaaatttatttcacccaaaggaaatgtatga |
54987669 |
T |
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| Q |
368 |
ttgcaccgaaatttcaaaaaactg |
391 |
Q |
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|||||||||||||||||||||||| |
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| T |
54987668 |
ttgcaccgaaatttcaaaaaactg |
54987645 |
T |
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