View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3266_low_9 (Length: 346)
Name: NF3266_low_9
Description: NF3266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3266_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 5413815 - 5414151
Alignment:
| Q |
1 |
tagccttcaacttcttctcgttgttcacagattttaaattgttacgccattgatacaaacnnnnnnntatcggtttacataaataagtaaaacacaatac |
100 |
Q |
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| T |
5413815 |
tagccttcaacttcttctcgttgttcacacattttaaattgttacgccattgatacaaacaaaaaaatatcggtttacataaataagtaaaacacagtac |
5413914 |
T |
|
| Q |
101 |
aaaaaatataagttgaagaatcttactactccagcaaacatgcacctgggccaccaggattggtattcagcggttgtgactccttctccacatgttgtgg |
200 |
Q |
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| T |
5413915 |
aaaaaatataagttgaagaatcttactactccagcaaacatgcacctgggccaccaggattggtattcagcagttgtgactccttctccacatattgtgg |
5414014 |
T |
|
| Q |
201 |
gtgctcatcatcgtcattcgcctcttcctctgaattatctgaatcatcatcctcctcctcaacatggtgttgttggggttggagctcagactcgtgcacc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5414015 |
gtgctcatcatcgtcattcgcctcttcctctgaattatctgaatcatcatcctcctcctcaacatggtgttgttggggttggagctcatactcgtgcacc |
5414114 |
T |
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| Q |
301 |
tgagatggttcagatctatcagtactacggtctctgc |
337 |
Q |
| |
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| T |
5414115 |
tgagatggttcagatctatcagtactacggtctctgc |
5414151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 329
Target Start/End: Complemental strand, 40570215 - 40570143
Alignment:
| Q |
257 |
cctcaacatggtgttgttggggttggagctcagactcgtgcacctgagatggttcagatctatcagtactacg |
329 |
Q |
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|||||||| ||||||||||||| | | | |||| ||||||||| |||||||| |||||| ||| |||||||| |
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| T |
40570215 |
cctcaacacggtgttgttggggctcgggttcagtctcgtgcactagagatggtccagatccatcggtactacg |
40570143 |
T |
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