View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3267_high_17 (Length: 307)
Name: NF3267_high_17
Description: NF3267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3267_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 124; Significance: 8e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 101 - 291
Target Start/End: Complemental strand, 5523922 - 5523716
Alignment:
| Q |
101 |
tttagcacaacaattagaaagaataaaattaccataacaacctcgagaagacaaagtaagtgaattgaattgtcttcaaagacacttcat---------- |
190 |
Q |
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| T |
5523922 |
tttagcacaacaattagaaagaataaaattaccataacaacctcgagaagacaaagtaagtgaattgaattgtcttcaaagacacttcatcgttcgtggc |
5523823 |
T |
|
| Q |
191 |
-----ccagagacgaccagaaaaatcataaaccgcagttccagtttaactcatttcgcctt-nnnnnnncaatcgaattgaattttgattgagatcatcg |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
5523822 |
agtacccagagacgaccagaaaaatcataaaccgcagttccagtttaactcatttcgccttaaaaaaaacaatcgaattgaattttgattgagatcgtcg |
5523723 |
T |
|
| Q |
285 |
aagaaag |
291 |
Q |
| |
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||||||| |
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| T |
5523722 |
aagaaag |
5523716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 87
Target Start/End: Complemental strand, 5523969 - 5523939
Alignment:
| Q |
57 |
ttacttacttttgttgatataatatttcttt |
87 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
5523969 |
ttacttacttttgttgatataatatttcttt |
5523939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 4719672 - 4719640
Alignment:
| Q |
1 |
tggttgtacaaatatcatttctcatgtatatat |
33 |
Q |
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||||||||||||||||||||||||| ||||||| |
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| T |
4719672 |
tggttgtacaaatatcatttctcatatatatat |
4719640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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