View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3267_high_24 (Length: 255)
Name: NF3267_high_24
Description: NF3267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3267_high_24 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 41705497 - 41705752
Alignment:
| Q |
1 |
taattactccctttcattgacctctctcaccaatcacgttcttccacgtgtctgtactcttcatc-tttcattaataaccgtaattcaattcccaacctc |
99 |
Q |
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| T |
41705497 |
taattactccctttcattgacctctctcaccaatcacgttcttccacgtgtctgtactcttcatcgtttcattaataaccgtaattcaattcccaacctc |
41705596 |
T |
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| Q |
100 |
tttttacttcatcgtcgccggttaaatctctccggcgagagtaacgcctctggatcaccgcacctcagccggcttgatgaaaaaaccgccgctgatgatc |
199 |
Q |
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| T |
41705597 |
tttttacttcatcgtcgccggttaaatctctccggcgagagtaacgcctctggatcaccgcacctcagccggcttgatgaaaaaaccgccgccgatgatc |
41705696 |
T |
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| Q |
200 |
ttgaaaacattggactcgctattgatttactcctccgccatgaacttcctccatct |
255 |
Q |
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| T |
41705697 |
ttgaaaacattggactcgctattgatttactcctccgccatgaacttcctccatct |
41705752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 45334881 - 45335128
Alignment:
| Q |
1 |
taattactccctttcattgacctctctcaccaatcacgttcttccacgtgtctgtactcttcatctttcattaataaccgtaattcaattcccaacctct |
100 |
Q |
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|||||||||| |||||||||| ||| ||||||| || |||||||| |||||||| |||||| || ||| |||| ||| |||||| | ||| || | ||| |
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| T |
45334881 |
taattactcc-tttcattgacatctatcaccaaccatattcttccatgtgtctgtcctcttcctcattcgttaaaaactgtaattta-ttctcatc-tct |
45334977 |
T |
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| Q |
101 |
ttttacttcatcgtcgccggttaaatctctccggcgagagtaacgcctctggatcaccgcacctcagccggcttgatgaaaaaaccgccgctgatgatct |
200 |
Q |
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| T |
45334978 |
tttcacttcattgttgtcggttaaatctctccggcgaaagcaacgccactggattaccgcatcgcagccggctcgacgagaatactgccgttgatgatct |
45335077 |
T |
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| Q |
201 |
tgaaaacattggactcgctattgatttactcctccgccatgaacttcctcc |
251 |
Q |
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|||||||| |||||| |||||||| |||| |||||||||||||| ||||| |
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| T |
45335078 |
cgaaaacatcggactcactattgatgtactactccgccatgaactccctcc |
45335128 |
T |
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