View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3267_high_3 (Length: 516)
Name: NF3267_high_3
Description: NF3267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3267_high_3 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 59; Significance: 9e-25; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 426 - 516
Target Start/End: Complemental strand, 30499699 - 30499609
Alignment:
| Q |
426 |
gttttccggtttcctaagggaacaagttatctccagcttaagcataaaaggggtagaactaataaaaacagagaagaaagagaaaaaggaa |
516 |
Q |
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| T |
30499699 |
gttttccggctttctaagggcacaagttctctccatcttaagcataaaaggggtagaactaataaaaacatagaagaaagaaaagaaggaa |
30499609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 211 - 311
Target Start/End: Complemental strand, 30500053 - 30499953
Alignment:
| Q |
211 |
taaaaactatattatcgaatttagaaatgagaggactaa-tttgtgagtcgatagaaattaaatggtcaaaagtgtatttaagcctttgatttaatattt |
309 |
Q |
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| T |
30500053 |
taaaaactatatttacgaatttagaaaggagaggactaaatttgcgagtcgatagaaat-aaatggtcaaaagtgtatttaagtctttagttcaatattt |
30499955 |
T |
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| Q |
310 |
gg |
311 |
Q |
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| T |
30499954 |
gg |
30499953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 389
Target Start/End: Complemental strand, 30499912 - 30499852
Alignment:
| Q |
329 |
ggaatatggaagtgtttcaaattggatatcgaagtaagtgtaaggctggagaggttggcag |
389 |
Q |
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| T |
30499912 |
ggaataaggaagtgttttaaattggatatcgcagtaggtgtaaggatgaagaggttggcag |
30499852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 90 - 172
Target Start/End: Complemental strand, 30500181 - 30500099
Alignment:
| Q |
90 |
gagactcacacattttaaatgaagagaagtggggagtctgagattcaaatttcggaccctacataatattctcattgcagcta |
172 |
Q |
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| T |
30500181 |
gagactcacacattttaaatcttgagaagtggagaatctgagatttgaacatcggcccctgcataatattgtcgttgcagcta |
30500099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 13105214 - 13105154
Alignment:
| Q |
71 |
gtcaagtaacctaatgactgagactcacacattttaaatgaagagaagtggggagtctgag |
131 |
Q |
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| T |
13105214 |
gtcaagtagcataatgactggagctcacacattttaaatgtggagaagtggggtgtctgag |
13105154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 91 - 191
Target Start/End: Original strand, 28815936 - 28816036
Alignment:
| Q |
91 |
agactcacacattttaaatgaagagaagtggggagtctgagattcaaatttcggaccctacataatattctcattgcagctactaacagagttgtgctta |
190 |
Q |
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| T |
28815936 |
agactcacacattttaaatgtggagaagtggaaattttgggattcaaactccacaccctgcataatactgtccttgcagctaccgactgagttgtgctta |
28816035 |
T |
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| Q |
191 |
c |
191 |
Q |
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| T |
28816036 |
c |
28816036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 35240003 - 35240067
Alignment:
| Q |
74 |
aagtaacctaatgactgagactcacacattttaaatgaagagaagtggggagtctgagattcaaa |
138 |
Q |
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| T |
35240003 |
aagtagcctagtgactgaggctcgcacattttaaatgtggaaaagtggggagtttgggattcaaa |
35240067 |
T |
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