View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3267_high_33 (Length: 247)
Name: NF3267_high_33
Description: NF3267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3267_high_33 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 240
Target Start/End: Complemental strand, 24461046 - 24460821
Alignment:
| Q |
15 |
atatctaaccactcttttgattaaaaaatgcatctctacaatgcatggttgccgccaccggtggcggctcaaaccgccggtgaaagagattcctttgctc |
114 |
Q |
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| T |
24461046 |
atatctaaccactcttttgattaaaaaatgcatctctacaatgcatggttgccgccaccggtggcagctcaaactgccggcgaaagagattcctttgctc |
24460947 |
T |
|
| Q |
115 |
gtatcatcgcctctgtcaactcttccttcaaccgtgacgatcccgaatccttttattctactctcaaatacatctccgttcttgacatgttagttccatt |
214 |
Q |
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|||||||||||| |||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24460946 |
gtatcatcgcctatgtcgactcttccttcaaccgtgatgatcccgaatccgtttattctactctcaaatacatctccgttcttgacatgttagttccatt |
24460847 |
T |
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| Q |
215 |
tttgaactcttcaattttgtctctgc |
240 |
Q |
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||| |||||||||||||||||||||| |
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| T |
24460846 |
tttcaactcttcaattttgtctctgc |
24460821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 37 - 238
Target Start/End: Complemental strand, 24479187 - 24478986
Alignment:
| Q |
37 |
aaaaaatgcatctctacaatgcatggttgccgccaccggtggcggctcaaaccgccggtgaaagagattcctttgctcgtatcatcgcctctgtcaactc |
136 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||| |
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| T |
24479187 |
aaaaaatgcatctctacaatgcatggttgccgccaccggtggcggctcaaaccgccggtgaaagagattcctttgctcgcatcatcgccgccgtcaactc |
24479088 |
T |
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| Q |
137 |
ttccttcaaccgtgacgatcccgaatccttttattctactctcaaatacatctccgttcttgacatgttagttccatttttgaactcttcaattttgtct |
236 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||| |
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| T |
24479087 |
ttccttcaaccgtgacgatcccgaatccgtttattctactctcaaatacatctccgttcttgacctgttagttccatttttcaactcttcaattttctct |
24478988 |
T |
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| Q |
237 |
ct |
238 |
Q |
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|| |
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| T |
24478987 |
ct |
24478986 |
T |
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