View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3267_high_40 (Length: 239)

Name: NF3267_high_40
Description: NF3267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3267_high_40
NF3267_high_40
[»] chr3 (3 HSPs)
chr3 (182-221)||(17747086-17747125)
chr3 (182-221)||(19048406-19048445)
chr3 (41-88)||(36953170-36953217)
[»] chr7 (1 HSPs)
chr7 (41-91)||(6819997-6820047)
[»] chr2 (3 HSPs)
chr2 (41-92)||(16807277-16807328)
chr2 (41-92)||(16846558-16846609)
chr2 (41-92)||(29999042-29999093)
[»] chr5 (1 HSPs)
chr5 (41-91)||(37034593-37034643)
[»] chr6 (1 HSPs)
chr6 (41-93)||(8648025-8648076)


Alignment Details
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 182 - 221
Target Start/End: Original strand, 17747086 - 17747125
Alignment:
Q  182 ttgtattcaatcgcgagatatttattaactgcaatccaat 221  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  17747086 ttgtattcaatcgcgagatatttattaactgcaatccaat 17747125  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 182 - 221
Target Start/End: Original strand, 19048406 - 19048445
Alignment:
Q  182 ttgtattcaatcgcgagatatttattaactgcaatccaat 221  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  19048406 ttgtattcaatcgcgagatatttattaactgcaatccaat 19048445  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 88
Target Start/End: Complemental strand, 36953217 - 36953170
Alignment:
Q  41 gtgtaattaatactaagaaagtctaaaatgtttccttttatggtaata 88  Q
    |||||||||||||||| |||||| || |||||||||||||||||||||    
T  36953217 gtgtaattaatactaaaaaagtcaaacatgtttccttttatggtaata 36953170  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 6819997 - 6820047
Alignment:
Q  41 gtgtaattaatactaagaaagtctaaaatgtttccttttatggtaataatt 91  Q
    |||||||||||||||| |||||| |||||||||| ||||||||||||||||    
T  6819997 gtgtaattaatactaaaaaagtcaaaaatgtttcattttatggtaataatt 6820047  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 92
Target Start/End: Complemental strand, 16807328 - 16807277
Alignment:
Q  41 gtgtaattaatactaagaaagtctaaaatgtttccttttatggtaataattt 92  Q
    |||||||||||||||| |||||  || ||||||||||||||| |||||||||    
T  16807328 gtgtaattaatactaaaaaagtaaaatatgtttccttttatgctaataattt 16807277  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 92
Target Start/End: Complemental strand, 16846609 - 16846558
Alignment:
Q  41 gtgtaattaatactaagaaagtctaaaatgtttccttttatggtaataattt 92  Q
    |||||||||||||||| |||||  || ||||||||||||||| |||||||||    
T  16846609 gtgtaattaatactaaaaaagtaaaatatgtttccttttatgctaataattt 16846558  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 92
Target Start/End: Complemental strand, 29999093 - 29999042
Alignment:
Q  41 gtgtaattaatactaagaaagtctaaaatgtttccttttatggtaataattt 92  Q
    |||||||||||||||| |||||| ||||| |||||||||||  |||||||||    
T  29999093 gtgtaattaatactaaaaaagtcaaaaatatttccttttatactaataattt 29999042  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 91
Target Start/End: Complemental strand, 37034643 - 37034593
Alignment:
Q  41 gtgtaattaatactaagaaagtctaaaatgtttccttttatggtaataatt 91  Q
    |||||||||||| ||| |||||| |||||||||| ||||||| ||||||||    
T  37034643 gtgtaattaatattaaaaaagtcaaaaatgtttctttttatgataataatt 37034593  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 8648076 - 8648025
Alignment:
Q  41 gtgtaattaatactaagaaagtctaaaatgtttccttttatggtaataatttc 93  Q
    |||||||||||||||| |||||| ||||| |||  ||||||||||||||||||    
T  8648076 gtgtaattaatactaaaaaagtc-aaaatattttattttatggtaataatttc 8648025  T

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