View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3267_high_41 (Length: 239)
Name: NF3267_high_41
Description: NF3267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3267_high_41 |
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Alignment Details
Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 19058259 - 19058324
Alignment:
| Q |
1 |
ctttcacaaaagcctttgtaaggtgcaaaataatttaaattggtgttagatttgagaaatttattg |
66 |
Q |
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| T |
19058259 |
ctttcacaaaagcctttgtaaggtgcaaaataatttaaattggtgttagatttgagaaatttattg |
19058324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 19058417 - 19058483
Alignment:
| Q |
159 |
catttgaatcatcagcattgccatccccgttggcaccatatgtaagaacattaaagttagaaccatc |
225 |
Q |
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| T |
19058417 |
catttgaatcatcagtattgccatccccgttggcaccatatgtaagaacattaaagttagaaccatc |
19058483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 38095303 - 38095260
Alignment:
| Q |
179 |
ccatccccgttggcaccatatgtaagaacattaaagttagaacc |
222 |
Q |
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| T |
38095303 |
ccatccccgatggcaccatatgtaagaacatcaaaggtagaacc |
38095260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 21549717 - 21549656
Alignment:
| Q |
159 |
catttgaatcatcagcattgccatccccgttggcaccatatgtaagaacattaaagttagaa |
220 |
Q |
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||||||||||||||| | |||||||| ||||||||||||||||||||| |||| ||||| |
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| T |
21549717 |
catttgaatcatcagtttgaccatccccaatggcaccatatgtaagaacatcaaaggtagaa |
21549656 |
T |
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