View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3267_high_5 (Length: 472)
Name: NF3267_high_5
Description: NF3267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3267_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 91 - 347
Target Start/End: Original strand, 41965198 - 41965454
Alignment:
| Q |
91 |
aaacattaagtggtttgaagttaatttgttgttaccttgacgtccttttcttgattgaccttcccttctacaagtattatcccaaaggtgagcttcatac |
190 |
Q |
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| T |
41965198 |
aaacattaagtggtttgaagttaatttgttgttaccttgacgtccttttcttgactgaccttcccttctacaagtattatcccaaaggtgagcttcatac |
41965297 |
T |
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| Q |
191 |
cttccggtccatctatgtctatatagagaatttgattttgaaggataaaagcaaattaaaataaatcacaacattgatgtatgtctaatgcgatttatgg |
290 |
Q |
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| T |
41965298 |
cttccggtccatctatgtctatatagagaatttgattttgaaggataaaagcaaattaaaataaatcacaacattgatgtatgtctaatgcgatttatgg |
41965397 |
T |
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| Q |
291 |
tgaaacacggttgccattactaacatgattttttcgacgaattctacttaagccaga |
347 |
Q |
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| T |
41965398 |
tgaaacacggttgccattactaacatgattttttcgacgaattctacttaagccaga |
41965454 |
T |
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Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 375 - 454
Target Start/End: Original strand, 41965545 - 41965624
Alignment:
| Q |
375 |
aatatattttcaaaccttgttacaccacgatatattgatgttctttggccaaaggtatccaaagctcttctaggtgttgc |
454 |
Q |
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| T |
41965545 |
aatatattttcaaaccttgttacaccacgatatattgatgttctttggccaaaggtatccaaagctcttctaggtgttgc |
41965624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 372
Target Start/End: Original strand, 41965522 - 41965551
Alignment:
| Q |
343 |
ccagacatgcaaaaaatttaaacaatatat |
372 |
Q |
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| T |
41965522 |
ccagacatgcaaaaaatttaaacaatatat |
41965551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 122 - 213
Target Start/End: Original strand, 24563122 - 24563213
Alignment:
| Q |
122 |
ttaccttgacgtccttttcttgattgaccttcccttctacaagtattatcccaaaggtgagcttcataccttccggtccatctatgtctata |
213 |
Q |
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| T |
24563122 |
ttaccttggcggccttttctcgactgaccttcccttctacagctgttatcccaaaggtgagcttcataccttccagtccatctatgtctata |
24563213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 30619980 - 30620032
Alignment:
| Q |
155 |
cttctacaagtattatcccaaaggtgagcttcataccttccggtccatctatg |
207 |
Q |
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| T |
30619980 |
cttctacaactattatcccaaaggtgagcttcatatctccctgtccatctatg |
30620032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 16869910 - 16869959
Alignment:
| Q |
162 |
aagtattatcccaaaggtgagcttcataccttccggtccatctatgtcta |
211 |
Q |
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| T |
16869910 |
aagtcttatcccatagatgagcttcaaaccttccggtccatctatgtcta |
16869959 |
T |
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