View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3267_low_13 (Length: 407)
Name: NF3267_low_13
Description: NF3267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3267_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 937200 - 937594
Alignment:
| Q |
1 |
tatgaaacatcaaactaaacattgcacaattacaagcaattggagattagtcatgttattac---atcaagagagaaaattaaataggattcaatttctt |
97 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
937200 |
tatgaaacatcaaactaaacattgcacaattacaagcaattggagattagtcatgttattactacatcaagagagaaaattaaataggattcaatttctt |
937299 |
T |
|
| Q |
98 |
caatgacattcttttggtgactttaacagcaatgagagctaaaatagtagctgttgggacaaagataacatcaggaatggctttcataacacttagttga |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
937300 |
caatgacattcttttggtgactttaacagcaatgagagctaaaatagtagctgttgggacaaagataacatcaggaatggctttcataacacttagttga |
937399 |
T |
|
| Q |
198 |
ggcacagactgtcctgttctcttagctaccatagctgctggaggtgccactattccagttatcatcatagaatcatctactttgcttatatttacattct |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
937400 |
ggcacagactgtcctgttctcttagctaccatagctgctggaggtgccactattccagttatcatcatagaatcatctactttgcttatatttacattct |
937499 |
T |
|
| Q |
298 |
taatcatgaaatcaatgaaaatatttttcttcttatcttcctcgcttgttttattccaatctctgaaaaatacctcaatttccttgtgtgatggt |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
937500 |
taatcatgaaatcaatgaaaatatttttcttcttatcttcctcgcttgttttattccaatctctgaaaaatacctcaatttccttgtgtgatggt |
937594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 2 - 311
Target Start/End: Original strand, 935430 - 935738
Alignment:
| Q |
2 |
atgaaacatcaaactaaacattgcacaattacaagcaattggagattagtcatgttattacatcaagagagaaaattaaataggattcaatttcttcaat |
101 |
Q |
| |
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||||||||||||| | || |||||||||| |||||||||| ||||||||||||| |||||||| | ||| |||||||||| ||||||||||||||| ||| |
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| T |
935430 |
atgaaacatcaaaattaatattgcacaatcacaagcaattagagattagtcatgctattacatga-gagtgaaaattaaacaggattcaatttcttgaat |
935528 |
T |
|
| Q |
102 |
gacattcttttggtgactttaacagcaatgagagctaaaatagtagctgttgggacaaagataacatcaggaatggctttcataacacttagttgaggca |
201 |
Q |
| |
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|||||||||| || || || |||||||| ||||| ||| |||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||| |
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| T |
935529 |
gacattctttctgtaacctttacagcaataagagcctaaactgtagctgttgggacaaagataacatcaggaatggatttggtaacacttcgttgaggca |
935628 |
T |
|
| Q |
202 |
cagactgtcctgttctcttagctaccatagctgctggaggtgccactattccagttatcatcatagaatcatctactttgcttatatttacattcttaat |
301 |
Q |
| |
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||| |||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||| || || ||||||||||||||||| |
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| T |
935629 |
caggttgtcctgttctcgtagctaccatagctgctggaggtgccactattctggtgatcatcatagaatcatctacattactcatatttacattcttaat |
935728 |
T |
|
| Q |
302 |
catgaaatca |
311 |
Q |
| |
|
|||||||||| |
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|
| T |
935729 |
catgaaatca |
935738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 7584529 - 7584363
Alignment:
| Q |
18 |
aacattgcacaattacaagcaattggagattagtcatg---ttattacatcaagagagaaaattaaataggattcaatt--tcttcaatgacattctttt |
112 |
Q |
| |
|
||||||||||||| |||||| ||||||||||| ||||| ||||||||| |||| || |||||||||||||||||||| |||| || |||||||||| |
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| T |
7584529 |
aacattgcacaatcacaagctattggagattaatcatgctattattacattaagaaaggaaattaaataggattcaatttatcttgaaagacattcttta |
7584430 |
T |
|
| Q |
113 |
ggtgactttaacagcaatgagagctaaaatagtagctgttgggacaaagataacatcaggaatggct |
179 |
Q |
| |
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| ||||||| |||| ||||||||| |||| |||| |||||||||| | ||||||||| |||||||| |
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|
| T |
7584429 |
gatgacttttacagtaatgagagccaaaactgtagttgttgggacagatataacatcaagaatggct |
7584363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 82 - 193
Target Start/End: Complemental strand, 7586031 - 7585920
Alignment:
| Q |
82 |
taggattcaatttcttcaatgacattcttttggtgactttaacagcaatgagagctaaaatagtagctgttgggacaaagataacatcaggaatggcttt |
181 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||| | |||||||||||| ||||| ||||||||| | | || | |||||||| ||||| |||| |
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|
| T |
7586031 |
taggattcaatttcttaaatgacattcttttgatgacttttatagcaatgagagccaaaattgtagctgttagtataacggtaacatcaagaatgacttt |
7585932 |
T |
|
| Q |
182 |
cataacacttag |
193 |
Q |
| |
|
|||||||||||| |
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|
| T |
7585931 |
cataacacttag |
7585920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 212 - 318
Target Start/End: Complemental strand, 7584356 - 7584250
Alignment:
| Q |
212 |
tgttctcttagctaccatagctgctggaggtgccactattccagttatcatcatagaatcatctactttgcttatatttacattcttaatcatgaaatca |
311 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| ||||||||| | ||||||||| ||||||||||||| || ||||||| |||||||| |||||||||| |
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|
| T |
7584356 |
tgttctcttagctatcatagctgctgtaggtgatactattccattgatcatcatataatcatctactttactaatatttatattcttaaccatgaaatca |
7584257 |
T |
|
| Q |
312 |
atgaaaa |
318 |
Q |
| |
|
|||||| |
|
|
| T |
7584256 |
gtgaaaa |
7584250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 252
Target Start/End: Complemental strand, 7579370 - 7579324
Alignment:
| Q |
207 |
tgtcctgttctcttagcta-ccatagctgctggaggtgccactattc |
252 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||| ||||| |
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|
| T |
7579370 |
tgtcttgttctcttagctaaccatagctgctggaggtgccaatattc |
7579324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 123 - 307
Target Start/End: Complemental strand, 38410495 - 38410308
Alignment:
| Q |
123 |
acagcaatgagagctaaaatagtagctgttgggacaaagataacatcaggaatggctttcataacacttagttgaggcacagac---tgtcctgttctct |
219 |
Q |
| |
|
|||||||||||||| |||| ||||||| || ||||||||||||||||||||| | ||||||| |||| ||||| | | ||||||||||| | |
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| T |
38410495 |
acagcaatgagagccaaaactgtagctgagggaacaaagataacatcaggaatgacattcataaattttagctgaggaaatgttgtttgtcctgttcttt |
38410396 |
T |
|
| Q |
220 |
tagctaccatagctgctggaggtgccactattccagttatcatcatagaatcatctactttgcttatatttacattcttaatcatgaa |
307 |
Q |
| |
|
|||| || || |||||||| |||||||||||||||| || |||||||| |||||||||||| | | ||| ||||||||| ||||||| |
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|
| T |
38410395 |
tagccactatggctgctggtggtgccactattccagcgattatcatagattcatctactttgttgagattcacattcttattcatgaa |
38410308 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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