View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3267_low_15 (Length: 380)

Name: NF3267_low_15
Description: NF3267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3267_low_15
NF3267_low_15
[»] chr2 (6 HSPs)
chr2 (1-366)||(30852353-30852718)
chr2 (172-270)||(30839705-30839803)
chr2 (183-235)||(30826530-30826582)
chr2 (13-64)||(15244016-15244067)
chr2 (8-66)||(36089479-36089537)
chr2 (172-229)||(30837758-30837815)
[»] chr1 (2 HSPs)
chr1 (13-72)||(16448138-16448197)
chr1 (13-64)||(30800466-30800517)
[»] chr5 (4 HSPs)
chr5 (8-88)||(14325879-14325958)
chr5 (21-66)||(36595810-36595855)
chr5 (13-88)||(35584388-35584462)
chr5 (16-77)||(966192-966253)
[»] chr4 (2 HSPs)
chr4 (13-77)||(17344254-17344318)
chr4 (8-80)||(17471943-17472015)
[»] chr7 (1 HSPs)
chr7 (34-105)||(21393147-21393217)
[»] chr8 (1 HSPs)
chr8 (13-94)||(13246803-13246883)
[»] chr3 (1 HSPs)
chr3 (14-94)||(26019489-26019568)


Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 30852718 - 30852353
Alignment:
Q  1 agttagattaataaaagttgatgtatctagactgaatcttgaatcagatacataaatttttgttgatccaattttctttttataaatatgatcgaaggta 100  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||  |||||||||||||||||| ||||||||||||||    
T  30852718 agttagattaataaaagtttatgtatctagactgaatattgaatcagatacataaacttttgttgtcccaattttctttttataagtatgatcgaaggta 30852619  T
Q  101 gtattaatcattcgattttgattagtgtgatttataatatttttattaatcatcgggattttgttgctaggttataactaacggaatatatcgaagtatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30852618 gtattaatcattcgattttgattagtgtgatttataatatttttattaatcatcgggattttgttgctaggttataactaacggaatatatcgaagtatc 30852519  T
Q  201 gagcatcgagcaattgtaaactctgaaaaagaaagaatgtcaattgcaacattctatacttcaagacatgatggagagatggctcctgcaaatagcttga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30852518 gagcatcgagcaattgtaaactctgaaaaagaaagaatgtcaattgcaacattctatacttcaagacatgatggagagatggctcctgcaaatagcttga 30852419  T
Q  301 tcactgaagaaacaccagcacgtttcaaaagaattggattaaaagaattcttgaggaatatgtttg 366  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30852418 tcactgaagaaacaccagcacgtttcaaaagaattggactaaaagaattcttgaggaatatgtttg 30852353  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 172 - 270
Target Start/End: Complemental strand, 30839803 - 30839705
Alignment:
Q  172 ttataactaacggaatatatcgaagtatcgagcatcgagcaattgtaaactctgaaaaagaaagaatgtcaattgcaacattctatacttcaagacatg 270  Q
    ||||||| || || |||||||||||||| || ||||||||||| || ||||| ||||| |||||| | |||||||| |||||||| | ||| |||||||    
T  30839803 ttataaccaatgggatatatcgaagtattgaacatcgagcaatagtgaactcggaaaaggaaagactttcaattgctacattctacagttcgagacatg 30839705  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 30826582 - 30826530
Alignment:
Q  183 ggaatatatcgaagtatcgagcatcgagcaattgtaaactctgaaaaagaaag 235  Q
    ||||||||||||||||| |||||||||||||  || ||||||||||| |||||    
T  30826582 ggaatatatcgaagtattgagcatcgagcaacagtgaactctgaaaaggaaag 30826530  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 15244016 - 15244067
Alignment:
Q  13 aaaagttgatgtatctagactgaatcttgaatcagatacataaatttttgtt 64  Q
    |||||||||||||||||| || ||| ||||||||||||||| || |||||||    
T  15244016 aaaagttgatgtatctagtctaaattttgaatcagatacattaacttttgtt 15244067  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 36089537 - 36089479
Alignment:
Q  8 ttaataaaagttgatgtatctagactgaatcttgaatcagatacataaatttttgttga 66  Q
    |||||||||||||||||||||||  | ||| ||||||||||||| | || |||||||||    
T  36089537 ttaataaaagttgatgtatctagtttaaattttgaatcagatacgttaacttttgttga 36089479  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 30837815 - 30837758
Alignment:
Q  172 ttataactaacggaatatatcgaagtatcgagcatcgagcaattgtaaactctgaaaa 229  Q
    ||||||| || |||||||||| |||||| |||||||||||||| || |||| ||||||    
T  30837815 ttataacaaatggaatatatcaaagtattgagcatcgagcaatagtcaactgtgaaaa 30837758  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 16448197 - 16448138
Alignment:
Q  13 aaaagttgatgtatctagactgaatcttgaatcagatacataaatttttgttgatccaat 72  Q
    |||||||||||||||| |||||||| ||||| |||||||||||| ||||||||| |||||    
T  16448197 aaaagttgatgtatctggactgaattttgaaccagatacataaacttttgttgacccaat 16448138  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 30800466 - 30800517
Alignment:
Q  13 aaaagttgatgtatctagactgaatcttgaatcagatacataaatttttgtt 64  Q
    ||||||||||||||||| ||||||| ||||||||||||||| || |||||||    
T  30800466 aaaagttgatgtatctatactgaattttgaatcagatacatcaacttttgtt 30800517  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 14325958 - 14325879
Alignment:
Q  8 ttaataaaagttgatgtatctagactgaatcttgaatcagatacataaatttttgttgatccaattttctttttataaata 88  Q
    |||| |||| ||||| |||||||||| ||| |||||||| |||||| |||||||||||||| |||||| || |||||||||    
T  14325958 ttaacaaaatttgatatatctagactaaattttgaatcaaatacattaatttttgttgatcaaatttt-ttcttataaata 14325879  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 36595855 - 36595810
Alignment:
Q  21 atgtatctagactgaatcttgaatcagatacataaatttttgttga 66  Q
    ||||||||||||||||| || |||||||||||| ||||||||||||    
T  36595855 atgtatctagactgaatttttaatcagatacatcaatttttgttga 36595810  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 35584462 - 35584388
Alignment:
Q  13 aaaagttgatgtatctagactgaatcttgaatcagatacataaatttttgttgatccaattttctttttataaata 88  Q
    ||||||||||||| ||  ||||||| | ||||||||||||| ||||| ||||||  ||| ||||||||||||||||    
T  35584462 aaaagttgatgtacctgaactgaat-tcgaatcagatacatcaatttatgttgactcaactttctttttataaata 35584388  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 966192 - 966253
Alignment:
Q  16 agttgatgtatctagactgaatcttgaatcagatacataaatttttgttgatccaattttct 77  Q
    |||| |||||||| |||||||| || || |||||||||  |||||||||||||||| |||||    
T  966192 agttcatgtatcttgactgaatttttaaccagatacattcatttttgttgatccaaatttct 966253  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 17344254 - 17344318
Alignment:
Q  13 aaaagttgatgtatctagactgaatcttgaatcagatacataaatttttgttgatccaattttct 77  Q
    ||||||||||||||||  ||||||| || |||| ||||||| || |||||||||||||| |||||    
T  17344254 aaaagttgatgtatctgaactgaatttttaatcggatacatcaacttttgttgatccaaatttct 17344318  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 17471943 - 17472015
Alignment:
Q  8 ttaataaaagttgatgtatctagactgaatcttgaatcagatacataaatttttgttgatccaattttctttt 80  Q
    |||| |||||||||||||| |||||||||| || ||| ||||||||||  |||| | ||| ||||||||||||    
T  17471943 ttaaaaaaagttgatgtatttagactgaattttaaattagatacataagcttttatcgattcaattttctttt 17472015  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 34 - 105
Target Start/End: Complemental strand, 21393217 - 21393147
Alignment:
Q  34 gaatcttgaatcagatacataaatttttgttgatccaattttctttttataaatatgatcgaaggtagtatt 105  Q
    |||| ||| |||||||||||||| |||||||||  ||||||| |||||||||| | |||||| |||||||||    
T  21393217 gaattttggatcagatacataaacttttgttgactcaatttt-tttttataaacaagatcgacggtagtatt 21393147  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 13246883 - 13246803
Alignment:
Q  13 aaaagttgatgtatctagactgaatcttgaatcagatacataaatttttgttgatccaattttctttttataaatatgatcg 94  Q
    ||||||| |||||||| |||||||| || | ||| ||||||  |||||||||||||||| |||| | ||||||||| |||||    
T  13246883 aaaagttcatgtatctggactgaatttttagtcaaatacattcatttttgttgatccaaatttc-tcttataaataggatcg 13246803  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 26019568 - 26019489
Alignment:
Q  14 aaagttgatgtatctagactgaatcttgaatcagatacataaatttttgttgatccaattttctttttataaatatgatcg 94  Q
    |||||| |||||||| |||| ||| ||||| |||||||||||| ||| ||||| | ||||||| | ||||||||| |||||    
T  26019568 aaagttaatgtatcttgactaaattttgaaccagatacataaactttggttgaccaaattttc-tcttataaataggatcg 26019489  T

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