View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3267_low_16 (Length: 365)
Name: NF3267_low_16
Description: NF3267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3267_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 22 - 355
Target Start/End: Original strand, 3754854 - 3755187
Alignment:
| Q |
22 |
tggccgacaatctatgtaaataaaaaatacgaataaacagacgagtatttcggtgaacaagtgagacaaatgatccatgacggaccatgtctgactaagt |
121 |
Q |
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| T |
3754854 |
tggccgacaatctatgtaaataaaaaatacgaataaacagacgagtatttcggtgaacaagtgaaacaaatgatccatgacggaccatgtctgactaagt |
3754953 |
T |
|
| Q |
122 |
agcgattaaaactcaatatgttatctaccatttagactatttcgtgaaattggaagtaaaaacaagaccacaagtttgaatattcctattcctttgccca |
221 |
Q |
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| T |
3754954 |
agcgattaaaactcaatatgttatctaccatttagactatttcgtgaaattggaagtaaaaacaagaccacaagtttgaatattcctattcctttgccca |
3755053 |
T |
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| Q |
222 |
attgataaacttgtttaaattcttacccccttcggctttgttctctgccaccatttccattaatttcgaagatctttctttaattccttcatcttcaagt |
321 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3755054 |
attgataaacttgtttaaattcttaccccctttggctttgttctccgccaccatttccattaattttgaagatctttctttaattccttcatcttcaagt |
3755153 |
T |
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| Q |
322 |
aattcatccaccttcttctttatctctccctttg |
355 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
3755154 |
aattcatccaccttcttctttatctctccctttg |
3755187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 354
Target Start/End: Original strand, 3767772 - 3767834
Alignment:
| Q |
292 |
gatctttctttaattccttcatcttcaagtaattcatccaccttcttctttatctctcccttt |
354 |
Q |
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|||||||||||||| ||| ||||| ||| |||| ||||||||||||||||||||| ||||| |
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| T |
3767772 |
gatctttctttaatatcttgatcttgaagcaattgttccaccttcttctttatctcttccttt |
3767834 |
T |
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