View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3267_low_18 (Length: 354)
Name: NF3267_low_18
Description: NF3267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3267_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 43905575 - 43905767
Alignment:
| Q |
15 |
acattttatttatttcactttactgtgactcttgaaaaagacactgaaaatggacattatcaaaggtttaacaaaaaataatatctccctnnnnnnngaa |
114 |
Q |
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| T |
43905575 |
acattttatttatttcactttactgtgactcttgaaaaagacactgaaaatggacattatcaaaggtttaacaaaaaataatatctccctaaaaaaagaa |
43905674 |
T |
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| Q |
115 |
tatgatgatcacatgaatggataaggaagatgaagagtatattttctaaagtagaaacgtaaaataaaagaaaaccacataatcctaattgcg |
207 |
Q |
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| T |
43905675 |
tatgatgatcacatgaatggataaggaagatgaagagtatattttctaaagtagaaacgtaaaataaaaggaaaccacataatcctaattgcg |
43905767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 241 - 354
Target Start/End: Original strand, 43905801 - 43905914
Alignment:
| Q |
241 |
aatagttgcttaataatctatttgatctattattattggcaaaaataaaatcaatccatatcacacctccgttcttgaattttaacatacttttttggtc |
340 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43905801 |
aatacttgcttaataatctatttgatctattattattggcaaaaataaaatcaatccatatcacacctccgttcttgaattttaacatacttttttggtc |
43905900 |
T |
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| Q |
341 |
tataattttttacc |
354 |
Q |
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| T |
43905901 |
tataattttttacc |
43905914 |
T |
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