View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3267_low_21 (Length: 288)
Name: NF3267_low_21
Description: NF3267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3267_low_21 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 44581723 - 44581993
Alignment:
| Q |
1 |
actcaaacaaatgagtgaacaaatacaaagggtttaatttatagccttaagcgatcaacgtcatggtgagataagataagaatcatattaaagacatgtt |
100 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44581723 |
actcaaacaaaagagtgaacaaatataaagggtttaatttatagccttaagcgatcaacgtcatggtgagataagataagaatcatattaaagacatgtt |
44581822 |
T |
|
| Q |
101 |
ctcatattttttactcatatgtcaatcaatttatttttgcaaaccatgggtggtccagttcacttctagacatcttcacctctaagaaagtacaaaaata |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
44581823 |
ctcatattttttactcatatatcaatcaatttatttttgcaaaccatgggtggtccagttcacttctagacctcttcacctcgaagaaagtacaaaaata |
44581922 |
T |
|
| Q |
201 |
agctgtggtttcaggatatccaatcttggtatttaatttattttgatgttaatgtttaggggtaaagagat |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44581923 |
agctgtggtttcaggatatccaatcttggtatttaatttattttgatgttaatgtttaggggtaaagagat |
44581993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 235
Target Start/End: Complemental strand, 42221906 - 42221833
Alignment:
| Q |
162 |
acttctagacatcttcacctctaagaaagtacaaaaataagctgtggtttcaggatatccaatcttggtattta |
235 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||| ||| |||||||||| |||| | ||| ||||||||| |
|
|
| T |
42221906 |
acttgtagacatcttcacctctaagaaagtatgaaacaaagttgtggtttcatgatagctaatgctggtattta |
42221833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 1717203 - 1717149
Alignment:
| Q |
159 |
ttcacttctagacatcttcacctctaagaaagtacaaaaataagctgtggtttca |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||| |||||||||| |
|
|
| T |
1717203 |
ttcacttctagacatcttcacctctaagaaagtatgaaacaaagttgtggtttca |
1717149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University