View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3267_low_22 (Length: 277)
Name: NF3267_low_22
Description: NF3267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3267_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 267
Target Start/End: Original strand, 38058013 - 38058260
Alignment:
| Q |
20 |
attcacataactcaacttcaatctctgaagttgtgtacaccaaaaccaattcctcttactcatcgatactcaaatttacaactcaaaatctcagatttgc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38058013 |
attcacataactcaacttcaatctctgaagttgtgtacaccaaaaccaattcctcttactcatcgatactcaaatttacaactcaaaatctcagatttgc |
38058112 |
T |
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| Q |
120 |
atccaacacaacacctaaacctcttgtcattatcacacctaaacagatttcccaaattcaaacaaccataatctgttcacaaatccacaacctgcagatt |
219 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38058113 |
atccaacacaacacctaaacctcttttcattatcacacctaaacagatttcccaaattcaaacaaccataatctgttcacaaatccacaacctgcagatt |
38058212 |
T |
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| Q |
220 |
cgaatccgaagtggtggccatgactttgagggtcggtcctatgcttct |
267 |
Q |
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| T |
38058213 |
cgaatccgaagcggtggccatgattttgagggtcggtcctatgtttct |
38058260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 20 - 267
Target Start/End: Complemental strand, 38062441 - 38062194
Alignment:
| Q |
20 |
attcacataactcaacttcaatctctgaagttgtgtacaccaaaaccaattcctcttactcatcgatactcaaatttacaactcaaaatctcagatttgc |
119 |
Q |
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|||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||| |
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| T |
38062441 |
attcacataactcaacttcaatgtctaaacttgtgtacaccaaaaccaattcctcttactcatcaatactccaatttaccactcaaaatctcagatttgc |
38062342 |
T |
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| Q |
120 |
atccaacacaacacctaaacctcttgtcattatcacacctaaacagatttcccaaattcaaacaaccataatctgttcacaaatccacaacctgcagatt |
219 |
Q |
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| T |
38062341 |
atccaaaacaacaccgaaacctcttgtcattatcacacctaaacatatttcccaaattcaaacaaccataatctgttcccaaagacatgacctgcagatt |
38062242 |
T |
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| Q |
220 |
cgaatccgaagtggtggccatgactttgagggtcggtcctatgcttct |
267 |
Q |
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||||||||||| || ||||| ||||| |||||||||||||||| |||| |
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| T |
38062241 |
cgaatccgaagcggcggccacgacttcgagggtcggtcctatgtttct |
38062194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 20 - 253
Target Start/End: Original strand, 38072341 - 38072574
Alignment:
| Q |
20 |
attcacataactcaacttcaatctctgaagttgtgtacaccaaaaccaattcctcttactcatcgatactcaaatttacaactcaaaatctcagatttgc |
119 |
Q |
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||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||| ||| |||||| ||||||||||| |
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| T |
38072341 |
attcacataacataacttcaatctctaaagttgtgtacacaaaaaccaattcctcttactcatcaatactcaaattttcaattcaaaacctcagatttgc |
38072440 |
T |
|
| Q |
120 |
atccaacacaacacctaaacctcttgtcattatcacacctaaacagatttcccaaattcaaacaaccataatctgttcacaaatccacaacctgcagatt |
219 |
Q |
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| |||| |||||| ||||| ||||||||||||||||||| ||| |||||||| ||||||||| ||||||||||||| ||| ||| | |||| ||| |
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| T |
38072441 |
aaccaatgaaacaccaaaaccccttgtcattatcacacctacacaaatttcccatattcaaacagccataatctgttcccaacaccatggcatgcaaatt |
38072540 |
T |
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| Q |
220 |
cgaatccgaagtggtggccatgactttgagggtc |
253 |
Q |
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||||| || ||||||||||| ||||| ||||||| |
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| T |
38072541 |
cgaattcgtagtggtggccacgacttcgagggtc |
38072574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 38081426 - 38081657
Alignment:
| Q |
20 |
attcacataactcaacttcaatctctgaagttgtgtacaccaaaaccaattcctcttactcatcgatactcaaatttacaactcaaaatctcagatttgc |
119 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||| |||||||| |
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| T |
38081426 |
attcacataactcaacttcaatctctaaagttgtgtacaccaaaaccaatccctcttactcaccagtactcaaatttacaactcaaaatctaagatttgc |
38081525 |
T |
|
| Q |
120 |
atccaacacaacacctaaacctcttgtcattatcacacctaaacagatttcccaaattcaaacaaccataatctgttcacaaatccacaacctgcagatt |
219 |
Q |
| |
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|||| ||| |||||| ||||| |||||||| ||||||||| | | |||||| ||||||||| ||||||| ||||| |||| || ||| |||||| |
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| T |
38081526 |
atcctacaaaacaccaaaaccacttgtcatcatcacacctctagaaccttcccatattcaaacagccataatttgttcccaaaatcatggcctccagatt |
38081625 |
T |
|
| Q |
220 |
cgaatccgaagtggtggccatgactttgaggg |
251 |
Q |
| |
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|||| ||| ||||| ||||||||||||||||| |
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| T |
38081626 |
cgaacccgtagtgggggccatgactttgaggg |
38081657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 20 - 262
Target Start/End: Original strand, 38085851 - 38086093
Alignment:
| Q |
20 |
attcacataactcaacttcaatctctgaagttgtgtacaccaaaaccaattcctcttactcatcgatactcaaatttacaactcaaaatctcagatttgc |
119 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||| ||||||| || ||| |||| |||||| ||||| |||||||||||||||||||||| |
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| T |
38085851 |
attcacataactccacttcaatctctaaagttgtgtacaccaaagccaattcatcatacacatcaatactccaattttcaactcaaaatctcagatttgc |
38085950 |
T |
|
| Q |
120 |
atccaacacaacacctaaacctcttgtcattatcacacctaaacagatttcccaaattcaaacaaccataatctgttcacaaatccacaacctgcagatt |
219 |
Q |
| |
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| |||||| |||||| ||||| ||||| ||| |||||||| | | |||||||| |||||| ||||| |||| ||||| ||| ||||| |||||||||| |
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| T |
38085951 |
aaccaacaaaacaccaaaaccacttgtaattgtcacacctctagaaatttcccatattcaagcaaccgtaatttgttcccaataccacagcctgcagatt |
38086050 |
T |
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| Q |
220 |
cgaatccgaagtggtggccatgactttgagggtcggtcctatg |
262 |
Q |
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||||| || || || || || ||||||||||||| ||| |||| |
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| T |
38086051 |
cgaattcgcagcggcggtcacgactttgagggtctgtcttatg |
38086093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 267
Target Start/End: Original strand, 37953867 - 37953922
Alignment:
| Q |
212 |
tgcagattcgaatccgaagtggtggccatgactttgagggtcggtcctatgcttct |
267 |
Q |
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|||||||||||||||||||||||||||| |||| || |||| |||||||| |||| |
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| T |
37953867 |
tgcagattcgaatccgaagtggtggccacgactacgaaggtctgtcctatgtttct |
37953922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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