View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3267_low_24 (Length: 268)
Name: NF3267_low_24
Description: NF3267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3267_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 14 - 254
Target Start/End: Complemental strand, 8913635 - 8913395
Alignment:
| Q |
14 |
agagctagcctaatgctttaaatctttctcaaattgaatacaacatgcagataaatgtccccactaactcataaaatagttataactaagataagcaaag |
113 |
Q |
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| T |
8913635 |
agagctagcctaatgctttaaatctttctcaaattgaatacaacatgcagataaatgtccccactaactcataaaatagttataactaagataagcaaag |
8913536 |
T |
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| Q |
114 |
agtgtcacgttcaagtacatgcactctttgcacataatgggaatacaattatacatctacttttgaactcaacaatggaatggaatcatatacttctcca |
213 |
Q |
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| T |
8913535 |
agtgtcacgttcaagtacatgcactctttgcacataatgggaatacaattatacatctacttttaaactcaacaatggaatggaatcatatacttctcca |
8913436 |
T |
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| Q |
214 |
cactttcatgcttatccaatgatagtgcctatgcatatgtt |
254 |
Q |
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| T |
8913435 |
cactttcatgcttatccaatgatagtgcctatgcatatgtt |
8913395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 20 - 254
Target Start/End: Complemental strand, 8346615 - 8346382
Alignment:
| Q |
20 |
agcctaatgctttaaatctttctcaaattgaatacaacatgcagataaatgtccccactaactcataaaatagttataactaagataagcaaagagtgtc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
8346615 |
agcctaatgctttaaatctttctcaaattgaatacaacatgcagataaatctccccaataactcataaaatagttgtaaccaagataagcaaagagtgtc |
8346516 |
T |
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| Q |
120 |
acgttcaagtacatgcactctttgcacataatgggaatacaattatacatctacttttgaactcaacaatggaatggaatcatatacttctccacacttt |
219 |
Q |
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| T |
8346515 |
acgttcaagtacatgcactctttgcacat-atgggaatacaattatacatctacttttgaactcaacaatggaatggaatcatatacttctccacacttt |
8346417 |
T |
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| Q |
220 |
catgcttatccaatgatagtgcctatgcatatgtt |
254 |
Q |
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| T |
8346416 |
catgcttatccaatgatagtgcctatgcatatgtt |
8346382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 20 - 254
Target Start/End: Original strand, 42823006 - 42823239
Alignment:
| Q |
20 |
agcctaatgctttaaatctttctcaaattgaatacaacatgcagataaatgtccccactaactcataaaatagttataactaagataagcaaagagtgtc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
42823006 |
agcctaatgctttaaatctttctcaaattgaatacaacatgcagataaatctccccaataactcataaaatagttgtaaccaagataagcaaagagtgtc |
42823105 |
T |
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| Q |
120 |
acgttcaagtacatgcactctttgcacataatgggaatacaattatacatctacttttgaactcaacaatggaatggaatcatatacttctccacacttt |
219 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42823106 |
acgttcaagtacatgcactctttgcacat-atgggaatacaattatacatctacttttgaactcaacaatggaatggaatcatatacttctccacacttt |
42823204 |
T |
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| Q |
220 |
catgcttatccaatgatagtgcctatgcatatgtt |
254 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
42823205 |
catgcttatccaatgatagtgcctatgcatatgtt |
42823239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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