View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3267_low_29 (Length: 252)

Name: NF3267_low_29
Description: NF3267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3267_low_29
NF3267_low_29
[»] chr6 (2 HSPs)
chr6 (1-239)||(8208128-8208366)
chr6 (10-46)||(23950053-23950089)
[»] chr8 (1 HSPs)
chr8 (10-62)||(39773592-39773643)
[»] chr7 (1 HSPs)
chr7 (10-62)||(7331138-7331189)
[»] chr4 (1 HSPs)
chr4 (10-62)||(2520294-2520345)
[»] chr2 (2 HSPs)
chr2 (10-62)||(29982178-29982229)
chr2 (10-62)||(37644432-37644483)
[»] chr1 (3 HSPs)
chr1 (10-62)||(32517549-32517600)
chr1 (10-62)||(35814017-35814068)
chr1 (10-62)||(45880782-45880833)


Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 8208128 - 8208366
Alignment:
Q  1 ccccccgtttctctttaggccccctaaaaatccaaaattacccttttataagacgtccggtacatagaattcggtagtttatttttgcctttctatattt 100  Q
    ||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  8208128 cccccagtttctctttaggctccctaaaaatccaaaattactcttttataagacgtccggtacatagaatccggtagtttatttttgcctttccatattt 8208227  T
Q  101 cacaactcttgaatgtacataccggatgcatgtttacaaattgcacatttatcacatccggtagttagagttcggatgaaagaagagaaagaagaacgtg 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8208228 cacaactcctgaatgtacataccggatgcatgtttacaaattgcacattcatcacatccggtagttagagttcagatgaaagaagagaaagaagaacgtg 8208327  T
Q  201 aatgaatctgtaagaagcgtgattgatgttgacctatct 239  Q
    ||||||||||||||||| |||||||||| ||||||||||    
T  8208328 aatgaatctgtaagaagtgtgattgatgctgacctatct 8208366  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 23950089 - 23950053
Alignment:
Q  10 tctctttaggccccctaaaaatccaaaattacccttt 46  Q
    |||||||||||||||||||||| |||||||| |||||    
T  23950089 tctctttaggccccctaaaaatacaaaattaaccttt 23950053  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 39773592 - 39773643
Alignment:
Q  10 tctctttaggccccctaaaaatccaaaattacccttttataagacgtccggta 62  Q
    |||||||||||||||||||||| ||||| || || |||||||||| |||||||    
T  39773592 tctctttaggccccctaaaaattcaaaaataacc-tttataagacttccggta 39773643  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 7331138 - 7331189
Alignment:
Q  10 tctctttaggccccctaaaaatccaaaattacccttttataagacgtccggta 62  Q
    |||||||||||||||||||||| ||||| || || |||||||||| |||||||    
T  7331138 tctctttaggccccctaaaaatacaaaaataacc-tttataagacttccggta 7331189  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 2520345 - 2520294
Alignment:
Q  10 tctctttaggccccctaaaaatccaaaattacccttttataagacgtccggta 62  Q
    |||||||||||||||||||||| ||||| || || |||||||||| |||||||    
T  2520345 tctctttaggccccctaaaaatacaaaaataacc-tttataagacttccggta 2520294  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 29982178 - 29982229
Alignment:
Q  10 tctctttaggccccctaaaaatccaaaattacccttttataagacgtccggta 62  Q
    |||||||||||||||||||||| ||||| || || |||||||||| |||||||    
T  29982178 tctctttaggccccctaaaaatacaaaaataacc-tttataagacttccggta 29982229  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 37644432 - 37644483
Alignment:
Q  10 tctctttaggccccctaaaaatccaaaattacccttttataagacgtccggta 62  Q
    |||||||||||||||||||||| ||||| || || |||||||||| |||||||    
T  37644432 tctctttaggccccctaaaaatacaaaaataacc-tttataagacttccggta 37644483  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 32517600 - 32517549
Alignment:
Q  10 tctctttaggccccctaaaaatccaaaattacccttttataagacgtccggta 62  Q
    |||||||||||||||||||||| ||||| || || |||||||||| |||||||    
T  32517600 tctctttaggccccctaaaaatacaaaaataacc-tttataagacttccggta 32517549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 35814068 - 35814017
Alignment:
Q  10 tctctttaggccccctaaaaatccaaaattacccttttataagacgtccggta 62  Q
    |||||||||||||||||||||| ||||| || || |||||||||| |||||||    
T  35814068 tctctttaggccccctaaaaatacaaaaataacc-tttataagacttccggta 35814017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 45880782 - 45880833
Alignment:
Q  10 tctctttaggccccctaaaaatccaaaattacccttttataagacgtccggta 62  Q
    |||||||||||||||||||||| ||||| || || |||||||||| |||||||    
T  45880782 tctctttaggccccctaaaaatacaaaaataacc-tttataagacttccggta 45880833  T

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