View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3267_low_3 (Length: 658)
Name: NF3267_low_3
Description: NF3267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3267_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 593; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 44 - 640
Target Start/End: Complemental strand, 8798395 - 8797799
Alignment:
| Q |
44 |
ttaccttgcggagggtgtggggcaaaaagtgatggtataatcagcagaagcacaagtgaaagtgctagttccatcatcataagcgtaactataagcgcgt |
143 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8798395 |
ttaccttgcggagggtgtggggcaaaaagtgatggtataatcagcagaagcacaagtgaaagtgctagttccatcatcataagcgtaactataagcgcgt |
8798296 |
T |
|
| Q |
144 |
ggacacgcactcttaaaaaactgcgagtaggaacttggtttacacgtatccggggaaccataagcgccactgcagcaatattgcggatccccaaacgctt |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8798295 |
ggacacgcactcttaaaaaactgcgagtaggaacttggtttacacgtatccggggaaccataagcgccactgcagcaatattgcggatccccaaacgctt |
8798196 |
T |
|
| Q |
244 |
cacacgcgcttttacacgccacgctctcttcaccgccgttattactacttatcactttcaactccatcggacacgccgcgtttaagtcgacggagcaacc |
343 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8798195 |
cacacgcgcttttacacgccacgctctcttcaccgccgttattactacttatcactttcaactccatcggacacgccgcgtttaagtcgacggagcaacc |
8798096 |
T |
|
| Q |
344 |
cgttgccgtgcagtttccgccgccggtttcaccgtgtggttcgattaatattgggagattgtaaccgtcgacgagactaacgtcgaagaaatcaagtcct |
443 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8798095 |
cgttgccgtgcagtttccgccgccggtttcaccgtgtggttcgattaatattgggagattgtaaccgtcgacgagactaacgtcgaagaaatcaagtcct |
8797996 |
T |
|
| Q |
444 |
ccggaaccgttgagtgtgaattctgctaatgttgccggtggtatagcgtttcttccggcacattcgatggtggaggaatcacagtcgccggtgatgcatg |
543 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8797995 |
ccggaaccgttgagtgtgaattctgctaatgttgccggtggtatagcgtttcttccggcacattcgatggtggaggaatcacagtcgccggtgatgcatg |
8797896 |
T |
|
| Q |
544 |
agaattttccagtggggtcttgggagcagagtgttcgtccccatagacggccggaccatgatggtggtacagcgagagcattggactcgcctggttg |
640 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8797895 |
agaattttccagtggggtcttgggagcagagtgttcgtccccatacacggccggaccatgatggtggtacagcgagagcattggactcgcctggttg |
8797799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 8810919 - 8810846
Alignment:
| Q |
66 |
caaaaagtgatggtataatcagcagaagcacaagtgaaagtgctagttccatcatcataagcgtaactataagc |
139 |
Q |
| |
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||||| ||||| |||||||||||| || |||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
8810919 |
caaaatgtgattgtataatcagcaccagaacaagtaaaagtgctagttttatcatcataagcgtaactataagc |
8810846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 168; Significance: 1e-89; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 59 - 601
Target Start/End: Original strand, 18954221 - 18954751
Alignment:
| Q |
59 |
tgtggggcaaaaagtgatggtataatcagcagaagcacaagtgaaagtgctagttccatcatcataagcgtaactataagcgcgtggacacgcactctta |
158 |
Q |
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|||||| |||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||| |
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| T |
18954221 |
tgtgggacaaaaagtgatggtataatctgcagaagcacaagcgaaagtgcttgttccatcatcataagcataactataagcacgtggacatgcactctta |
18954320 |
T |
|
| Q |
159 |
aaaaactgcgagtaggaacttggtttacacgtatccggggaaccataagcgccactgcagcaatattgcggatccccaaacgcttcacacgcgcttttac |
258 |
Q |
| |
|
|| || || ||||| |||||||| || || ||||| || | | | ||||||||| | || ||||||||| |||| ||||||||||||||||||||||||| |
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|
| T |
18954321 |
aagaattgtgagtacgaacttggcttgcatgtatctggagtagcgtaagcgccattacaacaatattgcagatctccaaacgcttcacacgcgcttttac |
18954420 |
T |
|
| Q |
259 |
acgccacgctctcttcaccgccgttattactacttatcactttcaactccatcggacacgccgcgtttaagtcgacggagcaacccgttgccgtgcagtt |
358 |
Q |
| |
|
|||| || || ||| |||| |||| |||||||||||||| | |||||||||| ||| || || || |||||| |||| | ||||||| |
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|
| T |
18954421 |
acgctacact-gctt-----ccgt------tactcatcactttcaactcggttggacacgccgtgttcaaatccaccatgcaacctgttgtcatgcagtt |
18954508 |
T |
|
| Q |
359 |
tccgccgccggtttcaccgtgtggttcgattaatattgggagattgtaaccgtcgacgagactaacgtcgaagaaatcaagtcctccggaaccgttgagt |
458 |
Q |
| |
|
||| || |||||| | || |||||| ||| || | ||||| ||||||||||| ||||||||||||||||||||||||||||| || | ||||| ||| |
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| T |
18954509 |
tccacccccggttgctccacgtggtttgatcaacaacgggaggttgtaaccgtcaacgagactaacgtcgaagaaatcaagtccacctgcgccgttaagt |
18954608 |
T |
|
| Q |
459 |
gtgaattctgctaatgttgccggtggtatagcgtttcttccggcacattcgatggtggaggaatcacagtcgccggtgatgcatgagaattttccagtgg |
558 |
Q |
| |
|
|| || |||||||||||||| || ||| |||||||| ||| ||||||| |||||||||||| |||||||||| || | |||||||||||||| |||| |
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| T |
18954609 |
gtaaactctgctaatgttgctggcggttgagcgtttcctccaacacattctatggtggaggaagcacagtcgccagtaacacatgagaattttccggtgg |
18954708 |
T |
|
| Q |
559 |
ggtcttgggagcagagtgttcgtccccatagacggccggacca |
601 |
Q |
| |
|
||||| ||||| || ||||| |||||||||||||||||||| |
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|
| T |
18954709 |
aatcttgagagcatagggttcggccccatagacggccggacca |
18954751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 59 - 601
Target Start/End: Original strand, 14039250 - 14039780
Alignment:
| Q |
59 |
tgtggggcaaaaagtgatggtataatcagcagaagcacaagtgaaagtgctagttccatcatcataagcgtaactataagcgcgtggacacgcactctta |
158 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||| ||||||| |||||||| ||| |||||||||||||||| ||||||||||| ||||| |||||||| |
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| T |
14039250 |
tgtgggacaaaaagtgatagtataatcagcagaatcacaagtaaaagtgcttgtttcatcatcataagcgtagctataagcgcgaggacaagcactcttg |
14039349 |
T |
|
| Q |
159 |
aaaaactgcgagtaggaacttggtttacacgtatccggggaaccataagcgccactgcagcaatattgcggatccccaaacgcttcacacgcgcttttac |
258 |
Q |
| |
|
|||||||| ||||| |||||||| || || |||| || ||| | ||||||||||| || |||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
14039350 |
aaaaactgtgagtatgaacttggcttgcatgtatttggagaagcgtaagcgccactacaacaatattgtggatccccaaacgcttcacacgcgcttttac |
14039449 |
T |
|
| Q |
259 |
acgccacgctctcttcaccgccgttattactacttatcactttcaactccatcggacacgccgcgtttaagtcgacggagcaacccgttgccgtgcagtt |
358 |
Q |
| |
|
|||| || | | ||||| | |||| |||||||||||||| | ||||| |||||||| || || || |||||| |||| | ||||||| |
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|
| T |
14039450 |
acgctacac------ctccgcc------attactcatcactttcaactcggttggacatgccgcgttcaaatccaccatgcaacctgttgtcatgcagtt |
14039537 |
T |
|
| Q |
359 |
tccgccgccggtttcaccgtgtggttcgattaatattgggagattgtaaccgtcgacgagactaacgtcgaagaaatcaagtcctccggaaccgttgagt |
458 |
Q |
| |
|
|||||| |||||| | || ||||||||||| | |||||||| ||||||||||| ||||||||||||||||||||||||||||| | |||||| ||| |
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| T |
14039538 |
tccgcctccggttgctccttgtggttcgatcatcattgggaggttgtaaccgtccacgagactaacgtcgaagaaatcaagtccgtttgcaccgttaagt |
14039637 |
T |
|
| Q |
459 |
gtgaattctgctaatgttgccggtggtatagcgtttcttccggcacattcgatggtggaggaatcacagtcgccggtgatgcatgagaattttccagtgg |
558 |
Q |
| |
|
|| || || |||||||| || || ||| |||||||| ||| |||||| |||| |||||| ||||||| ||||| | |||||||||||||| |||| |
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|
| T |
14039638 |
gtaaactcggctaatgtagctggcggttgagcgtttcctccattacattctatggacgaggaagcacagtcaccggtaacacatgagaattttccggtgg |
14039737 |
T |
|
| Q |
559 |
ggtcttgggagcagagtgttcgtccccatagacggccggacca |
601 |
Q |
| |
|
||||| |||||||| || ||||||||||||||||| ||||| |
|
|
| T |
14039738 |
aatcttgagagcagagggtacgtccccatagacggcctgacca |
14039780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 81 - 275
Target Start/End: Original strand, 31944985 - 31945179
Alignment:
| Q |
81 |
taatcagcagaagcacaagtgaaagtgctagttccatcatcataagcgtaactataagcgcgtggacacgcactcttaaaaaactgcgagtaggaacttg |
180 |
Q |
| |
|
||||| ||||| | ||||||||| ||||||||||||||||||||||| || |||||||||||||||||||| ||||| || ||||||||||| ||||||| |
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|
| T |
31944985 |
taatctgcagaggaacaagtgaaggtgctagttccatcatcataagcatagctataagcgcgtggacacgcgctcttgaagaactgcgagtatgaacttg |
31945084 |
T |
|
| Q |
181 |
gtttacacgtatccggggaaccataagcgccactgcagcaatattgcggatccccaaacgcttcacacgcgcttttacacgccacgctctcttca |
275 |
Q |
| |
|
| ||||| || | ||| | |||||||||||| |||| ||||| ||||| ||||| ||||| |||||||||||||| |||||||||| |||| |
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|
| T |
31945085 |
gcttacaagtctgcggagttccataagcgccattgcaacaatacaatggatcaccaaaggcttcgcacgcgcttttacatgccacgctcttttca |
31945179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 606
Target Start/End: Original strand, 31945432 - 31945513
Alignment:
| Q |
525 |
cagtcgccggtgatgcatgagaattttccagtggggtcttgggagcagagtgttcgtccccatagacggccggaccatgatg |
606 |
Q |
| |
|
||||| || |||||||||||||||||||| | |||||| ||||| |||||||| ||||||| ||||||||||| |||| |
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|
| T |
31945432 |
cagtctccagtgatgcatgagaattttccggaggggtcggttgagcatagtgttcggccccatatgcggccggaccaagatg |
31945513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 401 - 485
Target Start/End: Complemental strand, 8119120 - 8119036
Alignment:
| Q |
401 |
attgtaaccgtcgacgagactaacgtcgaagaaatcaagtcctccggaaccgttgagtgtgaattctgctaatgttgccggtggt |
485 |
Q |
| |
|
|||||||||||| || |||||||| |||||||| ||||| || || || |||| | ||||||||| ||||| |||||||||||| |
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|
| T |
8119120 |
attgtaaccgtcaacaagactaacatcgaagaagtcaagaccaccagagccgtctaatgtgaattcggctaaagttgccggtggt |
8119036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 436
Target Start/End: Original strand, 27975648 - 27975685
Alignment:
| Q |
399 |
agattgtaaccgtcgacgagactaacgtcgaagaaatc |
436 |
Q |
| |
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||||||||||||||||||||||| |||||| ||||||| |
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| T |
27975648 |
agattgtaaccgtcgacgagactcacgtcgtagaaatc |
27975685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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