View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3267_low_30 (Length: 250)
Name: NF3267_low_30
Description: NF3267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3267_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 52397376 - 52397570
Alignment:
| Q |
16 |
ataagagaatagaatacaaataaacggtggttgtttgcggctacaatacaaggctgcctgctacgacgttagaagcatgactaactatgggtcctgtttg |
115 |
Q |
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| T |
52397376 |
ataagagaatagaatacaaataaacggtggttgtttgcggctacaa---------ggctgctacgacgttagaagcatgactaactatgggtcctgtttg |
52397466 |
T |
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| Q |
116 |
agtatgagtttacatgacagagtttgcaacattcacataacgataacggggtagaacaaaacgtggctctaaatttgcattttaaatcttgtggttgagt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
52397467 |
agtatgagtttacatgacagagtttgcaacattcac------ataacggggtagaacaaaacgtgcctctaaatttgcattttaaatcttgtggttgagt |
52397560 |
T |
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