View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3267_low_37 (Length: 245)
Name: NF3267_low_37
Description: NF3267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3267_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 46922913 - 46923081
Alignment:
| Q |
18 |
ctatggggggtcagggtggagagtgtagagtcaattttcccaccttgtttttattgtggtaggccatcttaatctcaaattgagaatatcttaaaatcaa |
117 |
Q |
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| T |
46922913 |
ctatggggggtcagggtggagagtgttgaatcaattttcccaccttgtttttattgtggttggccatcttaatctcaaattgagaatatcttaaaatcaa |
46923012 |
T |
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| Q |
118 |
ctttttatgtaaaattgattttagtaatttgccggatactaattagcccttttaattggttgctaagca |
186 |
Q |
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| T |
46923013 |
ctttttatgtaaaattgattttagtaatttgccggatactaattagcccttttaattggttgttaagca |
46923081 |
T |
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Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 46923094 - 46923139
Alignment:
| Q |
181 |
taagcacaagtttagaagtgctagcagttctttgcatgcattgtta |
226 |
Q |
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| T |
46923094 |
taagcacaagtttagaagtgctagcagttctttgcatgcattgtta |
46923139 |
T |
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