View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3267_low_39 (Length: 242)
Name: NF3267_low_39
Description: NF3267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3267_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 8928060 - 8928280
Alignment:
| Q |
1 |
ttagattgtgtgtaatcaccgatcagtgatgattaactgattaagtatatgtaatgtgatgcagtgatgtagtagtactgnnnnnnnaaaagcaaaacaa |
100 |
Q |
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| T |
8928060 |
ttagattgtgtgtaatcaccgatcagtgatgattaactgattaagtatatgtaatgtgatgcagtgatgtagtagtactgttttttttaaagcaaaacaa |
8928159 |
T |
|
| Q |
101 |
ggtgctgtctcatgattcttctttggcttattgtgcttttgtaataaaatattattcttcatgcattaaaaaatacatatataagagacagaaatgttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8928160 |
ggtgctgtctcatgattcttctttggcttattgtgcttttgtaataaaatattattcttcatgcattaaaaaatacatatataagagacagaaatgttca |
8928259 |
T |
|
| Q |
201 |
ttaaaattaacgtaagggagt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
8928260 |
ttaaaattaacgtaagggagt |
8928280 |
T |
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