View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3267_low_49 (Length: 220)
Name: NF3267_low_49
Description: NF3267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3267_low_49 |
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| [»] chr2 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 8913636 - 8913855
Alignment:
| Q |
1 |
ttgatccaatccaattatgtggtcacacaataacatgaatgtctctttctcaatacttatttatgccggttaatttgccatcttctggttatagttggaa |
100 |
Q |
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| T |
8913636 |
ttgatccaatccaattatgtggtcacacaataacatgaatgtctctttctcaatacttatttatgccggttaatttgccatcttctggttatagttggaa |
8913735 |
T |
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| Q |
101 |
tctcaatctgaacctctcccatcagattaattggtgtccttatatatcaagtcattcatgatcttactttggttaagagttcctaaacttttgggaaata |
200 |
Q |
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| T |
8913736 |
tctcaatctgaacctttcccatcagattaattggtgtccttatatatcaagtcattcatgatcttactttggttaagagttcctaaacttttgggaaata |
8913835 |
T |
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| Q |
201 |
aagtaaagagcatttggttc |
220 |
Q |
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| T |
8913836 |
aactaaagagcatttggttc |
8913855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 8346618 - 8346838
Alignment:
| Q |
1 |
ttgatccaatccaattatgtggtcacac-aataacatgaatgtctctttctcaatacttatttatgccggttaatttgccatcttctggttatagttgga |
99 |
Q |
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| T |
8346618 |
ttgatccaatccaattatgtggtcacaataataacatgaaggtctctatcaaaatacgtatttatgccggttaatttgccatcttatggttatagttgga |
8346717 |
T |
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| Q |
100 |
atctcaatctgaacctctcccatcagattaattggtgtccttatatatcaagtcattcatgatcttactttggttaagagttcctaaacttttgggaaat |
199 |
Q |
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| T |
8346718 |
atctcaatctgaacctttaccatcagattaattggtgtccttatatatcaagtcattcatgatcttactttggttaagagttcctaaacgtttgggaaat |
8346817 |
T |
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| Q |
200 |
aaagtaaagagcatttggttc |
220 |
Q |
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| T |
8346818 |
acactaaagagcatttggttc |
8346838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 42823003 - 42822783
Alignment:
| Q |
1 |
ttgatccaatccaattatgtggtcacac-aataacatgaatgtctctttctcaatacttatttatgccggttaatttgccatcttctggttatagttgga |
99 |
Q |
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||||||||||||||||||||||||||| ||||||||||| |||||| || ||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42823003 |
ttgatccaatccaattatgtggtcacaataataacatgaaggtctctatcaaaatacgtatttatgccggttaatttgccatcttatggttatagttgga |
42822904 |
T |
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| Q |
100 |
atctcaatctgaacctctcccatcagattaattggtgtccttatatatcaagtcattcatgatcttactttggttaagagttcctaaacttttgggaaat |
199 |
Q |
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|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
42822903 |
atctcaatctgaacctttaccatcagattaattggtgtccttatatatcaagtcattcatgatcttactttggttaagagttcctaaacgtttgggaaat |
42822804 |
T |
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| Q |
200 |
aaagtaaagagcatttggttc |
220 |
Q |
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| | ||||||||||||||||| |
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| T |
42822803 |
acactaaagagcatttggttc |
42822783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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