View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3267_low_5 (Length: 497)

Name: NF3267_low_5
Description: NF3267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3267_low_5
NF3267_low_5
[»] chr1 (9 HSPs)
chr1 (225-485)||(9657755-9658024)
chr1 (225-485)||(7102974-7103243)
chr1 (223-485)||(7631407-7631678)
chr1 (169-224)||(1781761-1781818)
chr1 (224-261)||(7630658-7630695)
chr1 (225-261)||(7103958-7103994)
chr1 (229-261)||(9658739-9658771)
chr1 (225-272)||(33619355-33619402)
chr1 (224-306)||(33620261-33620343)
[»] scaffold0016 (2 HSPs)
scaffold0016 (224-473)||(92585-92843)
scaffold0016 (223-261)||(94271-94309)
[»] chr7 (2 HSPs)
chr7 (19-173)||(1846155-1846309)
chr7 (169-224)||(1845979-1846034)
[»] chr4 (1 HSPs)
chr4 (26-173)||(21608762-21608909)
[»] chr3 (2 HSPs)
chr3 (224-302)||(36979783-36979861)
chr3 (224-302)||(37005222-37005300)
[»] chr5 (1 HSPs)
chr5 (224-306)||(41785748-41785830)
[»] chr8 (1 HSPs)
chr8 (225-306)||(10366040-10366121)


Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 225 - 485
Target Start/End: Original strand, 9657755 - 9658024
Alignment:
Q  225 ggtggcatttactatgcacactacacaaatttgtgcatgattcacaaagattgtcatgaatcaatagcagccattgatatatattaaatctaattggacg 324  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9657755 ggtggcatttactatgcacactgcacaaatttgtgcatgattcaaaaagattgtcatgaatcaataccagccattgatatatattaaatctaattggacg 9657854  T
Q  325 gtcaggatgtttgattggcaacctgctagattccttttcctttaaacacagaaaccgagacattaccccacgataacattaatttataatatttttgctg 424  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  9657855 gtcaggatgtttgactggcaacctgctagattccttttcctttaaacacagaaaccgagacattaccccacaataacattaatttataatatttttgttg 9657954  T
Q  425 cgttctaa---------gtgtgccgatgttttgcccataaacattttcattaacttagtttacttcttca 485  Q
     |||||||         |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9657955 ggttctaatgttagaatgtgtgccgatgttttgcccagaaacattttcattaacttagtttacttcttca 9658024  T

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Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 225 - 485
Target Start/End: Original strand, 7102974 - 7103243
Alignment:
Q  225 ggtggcatttactatgcacactacacaaatttgtgcatgattcacaaagattgtcatgaatcaatagcagccattgatatatattaaatctaattggacg 324  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  7102974 ggtggcatttactatgcacaccgcacaaatttgtgcatgattcacaaagattgtcatgaatcaataccagccattgatatatattaaatctaattggacg 7103073  T
Q  325 gtcaggatgtttgattggcaacctgctagattccttttcctttaaacacagaaaccgagacattaccccacgataacattaatttataatatttttgctg 424  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  7103074 gtcaggatgtttgactggcaacctgctagattccttttcctttaaacacagaaaccgagacattaccccacaataacattaatttataatatttttgttg 7103173  T
Q  425 cgttctaa---------gtgtgccgatgttttgcccataaacattttcattaacttagtttacttcttca 485  Q
     |||||||         |||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  7103174 ggttctaatgttagaatgtgtgccgatgttttgccaagaaacattttcattaacttagtttacttcttca 7103243  T

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Target: chr1; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 223 - 485
Target Start/End: Complemental strand, 7631678 - 7631407
Alignment:
Q  223 taggtggcatttactatgcacactacacaaatttgtgcatgattcacaaagattgtcatgaatcaatagcagccattgatatatattaaatctaattgga 322  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  7631678 taggtggcatttactatgcacactgcacaaatttgtgcatgattcacaaagattgtcatgaatcaataccagccattgatatatattaaatctaattaga 7631579  T
Q  323 cggtcaggatgtttgattggcaacctgctagattccttttcctttaaacacagaaaccgagacattaccccacgataacattaatttataatatttttgc 422  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  7631578 cggtcaggatgtttgactggcaacctgctagattctttttcctttaaacacagaaaccgagacattaccccacaataacattaatttataatatttttgt 7631479  T
Q  423 tgcgttctaa---------gtgtgccgatgttttgcccataaacattttcattaacttagtttacttcttca 485  Q
    || |||||||         |||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  7631478 tgggttctaatgttagaatgtgtgccgatgttttgcccagaaacattttcattaacttagtttactttttca 7631407  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 1781761 - 1781818
Alignment:
Q  169 aagaatactgccaacacaagaattagccgtcacgggaca--ctgaagccatacttcta 224  Q
    ||||||||||||||| |||||||||||||||| ||||||  |||||||||||||||||    
T  1781761 aagaatactgccaacgcaagaattagccgtcatgggacactctgaagccatacttcta 1781818  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 224 - 261
Target Start/End: Original strand, 7630658 - 7630695
Alignment:
Q  224 aggtggcatttactatgcacactacacaaatttgtgca 261  Q
    |||||| |||||||||||||||||||||||||||||||    
T  7630658 aggtggtatttactatgcacactacacaaatttgtgca 7630695  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 261
Target Start/End: Complemental strand, 7103994 - 7103958
Alignment:
Q  225 ggtggcatttactatgcacactacacaaatttgtgca 261  Q
    ||||| |||||||||||||||||||||||||||||||    
T  7103994 ggtggtatttactatgcacactacacaaatttgtgca 7103958  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 261
Target Start/End: Complemental strand, 9658771 - 9658739
Alignment:
Q  229 gcatttactatgcacactacacaaatttgtgca 261  Q
    |||||||||||||||||||||||||||||||||    
T  9658771 gcatttactatgcacactacacaaatttgtgca 9658739  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 272
Target Start/End: Original strand, 33619355 - 33619402
Alignment:
Q  225 ggtggcatttactatgcacactacacaaatttgtgcatgattcacaaa 272  Q
    |||||||||||| |||||||  ||||||||||||||||||| ||||||    
T  33619355 ggtggcatttacaatgcacaagacacaaatttgtgcatgatacacaaa 33619402  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 306
Target Start/End: Complemental strand, 33620343 - 33620261
Alignment:
Q  224 aggtggcatttactatgcacactacacaaatttgtgcatgattcacaaagattgtcatgaatcaatagcagccattgatatat 306  Q
    ||||||||||||| |||||||  |||||||||||||||| || ||||||   | | |||||| ||||  ||||||||||||||    
T  33620343 aggtggcatttacaatgcacaagacacaaatttgtgcatcatgcacaaattgtttgatgaatgaataatagccattgatatat 33620261  T

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Target: scaffold0016 (Bit Score: 175; Significance: 5e-94; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 224 - 473
Target Start/End: Original strand, 92585 - 92843
Alignment:
Q  224 aggtggcatttactatgcacactacacaaatttgtgcatgattcacaaagattgtcatgaatcaatagcagccattgatatatattaaatctaattggac 323  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||    
T  92585 aggtggcatttactatgcacactccacaaatttgtgcatgattgacaaagattgtcatgaatcaatatcagccattgatatatattaaatctaattgaac 92684  T
Q  324 ggtcaggatgtttgattggcaacctgctagattccttttcctttaaacacagaaaccgagacattaccccacgataacattaatttataatatttttgct 423  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||| ||||||||| |||||||||||||||||||||||||||    
T  92685 ggtcaggatgtttgactggcaacctgctagattccttttcctttaaacacggaaatcgagactttaccccacaataacattaatttataatatttttgct 92784  T
Q  424 gcgttctaa---------gtgtgccgatgttttgcccataaacattttcattaacttag 473  Q
    | ||| |||         |||||||||||||||||| | ||||||||||||||||||||    
T  92785 gggttataatgttagaatgtgtgccgatgttttgcctagaaacattttcattaacttag 92843  T

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Target: scaffold0016; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 223 - 261
Target Start/End: Complemental strand, 94309 - 94271
Alignment:
Q  223 taggtggcatttactatgcacactacacaaatttgtgca 261  Q
    |||||||||||||||||||||||||||||||||||||||    
T  94309 taggtggcatttactatgcacactacacaaatttgtgca 94271  T

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Target: chr7 (Bit Score: 135; Significance: 4e-70; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 1846309 - 1846155
Alignment:
Q  19 agacgaacctaacattaataaatccataaagatcaaccaataaaattggcaatgcaaaacatgctatcgtgcaatgagtatgatctccaaataataaata 118  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||| ||||||||||||    
T  1846309 agacgaacctaacattaataaatccagaaagatcaaccaataaaaatggcaatgcaaaacatgctatcgtgcatagagtatgatctctaaataataaata 1846210  T
Q  119 aaaaacagtttgacaagcatttcaaggctacaggacacgatgcatatatgaagaa 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1846209 aaaaacagtttgacaagcatttcaaggctacaggacacgatgcatatatgaagaa 1846155  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 1846034 - 1845979
Alignment:
Q  169 aagaatactgccaacacaagaattagccgtcacgggacactgaagccatacttcta 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1846034 aagaatactgccaacacaagaattagccgtcacgggacactgaagccatacttcta 1845979  T

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Target: chr4 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 26 - 173
Target Start/End: Complemental strand, 21608909 - 21608762
Alignment:
Q  26 cctaacattaataaatccataaagatcaaccaataaaattggcaatgcaaaacatgctatcgtgcaatgagtatgatctccaaataataaataaaaaaca 125  Q
    |||| |||||||||||||| |||||||||||||||||| ||||||||| ||||||| ||| |||||  |  |||| ||||||   |||||| ||||||||    
T  21608909 cctagcattaataaatccagaaagatcaaccaataaaaatggcaatgccaaacatgttattgtgcatagtctatggtctccaccgaataaacaaaaaaca 21608810  T
Q  126 gtttgacaagcatttcaaggctacaggacacgatgcatatatgaagaa 173  Q
    |||| ||| ||||||||||||||||||||| |||||||||||||||||    
T  21608809 gtttaacaggcatttcaaggctacaggacatgatgcatatatgaagaa 21608762  T

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Target: chr3 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 224 - 302
Target Start/End: Complemental strand, 36979861 - 36979783
Alignment:
Q  224 aggtggcatttactatgcacactacacaaatttgtgcatgattcacaaagattgtcatgaatcaatagcagccattgat 302  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  36979861 aggtggcatttactatgcacactgcacaaatttgtgcatgattcacaaagattgtcatgaatcaataccagccattgat 36979783  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 224 - 302
Target Start/End: Complemental strand, 37005300 - 37005222
Alignment:
Q  224 aggtggcatttactatgcacactacacaaatttgtgcatgattcacaaagattgtcatgaatcaatagcagccattgat 302  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  37005300 aggtggcatttactatgcacactgcacaaatttgtgcatgattcacaaagattgtcatgaatcaataccagccattgat 37005222  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 306
Target Start/End: Original strand, 41785748 - 41785830
Alignment:
Q  224 aggtggcatttactatgcacactacacaaatttgtgcatgattcacaaagattgtcatgaatcaatagcagccattgatatat 306  Q
    ||||||||||||| |||||||  |||||||||||||||| || ||||||   | | |||||| ||||  ||||||||||||||    
T  41785748 aggtggcatttacaatgcacaagacacaaatttgtgcatcatgcacaaattgtttgatgaatgaataatagccattgatatat 41785830  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 306
Target Start/End: Original strand, 10366040 - 10366121
Alignment:
Q  225 ggtggcatttactatgcacactacacaaatttgtgcatgattcacaaagattgtcatgaatcaatagcagccattgatatat 306  Q
    |||||||||||| |||||||  |||||||||||||||| || |||||    | |||||||| ||||  ||||||||||||||    
T  10366040 ggtggcatttacaatgcacaagacacaaatttgtgcatcatacacaagttgtttcatgaatgaataatagccattgatatat 10366121  T

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