View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3267_low_7 (Length: 444)

Name: NF3267_low_7
Description: NF3267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3267_low_7
NF3267_low_7
[»] chr6 (9 HSPs)
chr6 (20-433)||(9179969-9180382)
chr6 (20-314)||(9146050-9146344)
chr6 (318-433)||(9147063-9147178)
chr6 (340-384)||(31117172-31117216)
chr6 (75-212)||(31117674-31117811)
chr6 (80-184)||(6613013-6613117)
chr6 (340-384)||(31116816-31116860)
chr6 (81-184)||(6631693-6631796)
chr6 (341-384)||(31117536-31117579)
[»] chr4 (2 HSPs)
chr4 (119-243)||(17374052-17374176)
chr4 (337-382)||(7110483-7110528)
[»] chr8 (1 HSPs)
chr8 (350-431)||(596738-596819)


Alignment Details
Target: chr6 (Bit Score: 366; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 20 - 433
Target Start/End: Complemental strand, 9180382 - 9179969
Alignment:
Q  20 ccggggcgattacttcattgataatagtaactgttaccctaccaaaaggcccaaaaccaaaagctatagtatctctaaccttacatgcaagtagtatagt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  9180382 ccggggcgattacttcattgataatagtaactgttaccctaccaaaaggcccaaaaccaaaagcggtagtatctctaaccttacatgcaagtagtatagt 9180283  T
Q  120 taggagaatcgaaaattttaaggtcgttggattttgagttgccattgttgtatgcacaatgcctattaaccgtacaacaatcttaatttatagaacattc 219  Q
    |||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  9180282 taggagaataattttttttaaggtcgttggattttgagttgccattgttgtatgcacaatgcctataaaccgtacaacaattttaatttatagaacattc 9180183  T
Q  220 aacaaaggaaattatttgcaaatttaaagaccttgttgacctcataattagttaattatgaaattagcttaattgttctcatcaaattcaaagggtaata 319  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9180182 aacaatggaaattatttgcaaatttaaagaccttgttgacctcataattagtcaattatgaaattagcttaattgttctcatcaaattcaaagggtaata 9180083  T
Q  320 cacgttgcatgaaaagagggatttgttcattgacttttctcattttagtcagcaagaataaattgacttaattttgagcaaaaacatttgaattatttcc 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9180082 cacgttgcatgaaaagagggatttgttcattgacttttctcattttagtcagcaagaataaattgacttaattttgagcaaaaacatttgaattatttcc 9179983  T
Q  420 cattttgtgatatt 433  Q
    ||||||||||||||    
T  9179982 cattttgtgatatt 9179969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 20 - 314
Target Start/End: Original strand, 9146050 - 9146344
Alignment:
Q  20 ccggggcgattacttcattgataatagtaactgttaccctaccaaaaggcccaaaaccaaaagctatagtatctctaaccttacatgcaagtagtatagt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9146050 ccggggcgattacttcattgataatagtaactgttaccctaccaaaaggcccaaaaccaaaagctatagtatctctaaccttacatgcaagtagtatagt 9146149  T
Q  120 taggagaatcgaaaattttaaggtcgttggattttgagttgccattgttgtatgcacaatgcctattaaccgtacaacaatcttaatttatagaacattc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  9146150 taggagaatcgaaaattttaaggtcgttggattttgagttgccattgttgtatgcacaatgtctataaaccgtacaacaatcttaatttatagaacattc 9146249  T
Q  220 aacaaaggaaattatttgcaaatttaaagaccttgttgacctcataattagttaattatgaaattagcttaattgttctcatcaaattcaaaggg 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9146250 aacaaaggaaattatttgcaaatttaaagaccttgttgacctcataattagtcaattatgaaattagcttaattgttctcatcaaattcaaaggg 9146344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 318 - 433
Target Start/End: Original strand, 9147063 - 9147178
Alignment:
Q  318 tacacgttgcatgaaaagagggatttgttcattgacttttctcattttagtcagcaagaataaattgacttaattttgagcaaaaacatttgaattattt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9147063 tacacgttgcatgaaaagagggatttgttcattgacttttctcattttagtcagcaagaataaattgacttcattttgagcaaaaacatttgaattattt 9147162  T
Q  418 cccattttgtgatatt 433  Q
    ||||||||||||||||    
T  9147163 cccattttgtgatatt 9147178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 340 - 384
Target Start/End: Complemental strand, 31117216 - 31117172
Alignment:
Q  340 atttgttcattgacttttctcattttagtcagcaagaataaattg 384  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  31117216 atttgttcattgacttttgtcattttagtcagcaagaataaattg 31117172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 75 - 212
Target Start/End: Complemental strand, 31117811 - 31117674
Alignment:
Q  75 accaaaagctatagtatctctaaccttacatgcaagtagtatagttaggagaatcgaaaattttaaggtcgttggattttgagttgccattgttgtatgc 174  Q
    ||||| ||| ||||| |||||| ||| | |||||||||| ||  ||||||| || ||  ||||||||||  ||| | || || |||||||||||||||||    
T  31117811 accaatagcgatagtctctctagcctcaaatgcaagtagcatgattaggagtattgatgattttaaggtgattgcacttggaattgccattgttgtatgc 31117712  T
Q  175 acaatgcctattaaccgtacaacaatcttaatttatag 212  Q
    ||||||||||  |  | |||| ||||||||||||||||    
T  31117711 acaatgcctacaagacatacatcaatcttaatttatag 31117674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 184
Target Start/End: Complemental strand, 6613117 - 6613013
Alignment:
Q  80 aagctatagtatctctaaccttacatgcaagtagtatagttaggagaatcgaaaattttaaggtcgttggattttgagttgccattgttgtatgcacaat 179  Q
    |||||||||| |||||  ||| | ||||||||||| |||||||||| || ||| |||||||| |  ||| | || |||||| ||||||||||| | ||||    
T  6613117 aagctatagtctctctggcctcaaatgcaagtagtgtagttaggagtattgaacattttaagataattgtacttggagttgtcattgttgtatactcaat 6613018  T
Q  180 gccta 184  Q
    |||||    
T  6613017 gccta 6613013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 384
Target Start/End: Complemental strand, 31116860 - 31116816
Alignment:
Q  340 atttgttcattgacttttctcattttagtcagcaagaataaattg 384  Q
    |||||||||||||||||| ||||| |||||||||||||| |||||    
T  31116860 atttgttcattgacttttgtcattgtagtcagcaagaattaattg 31116816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 184
Target Start/End: Complemental strand, 6631796 - 6631693
Alignment:
Q  81 agctatagtatctctaaccttacatgcaagtagtatagttaggagaatcgaaaattttaaggtcgttggattttgagttgccattgttgtatgcacaatg 180  Q
    |||||||||||| ||| ||| | |||||||||||||  ||| ||| || |||||||||||| |  ||| |||| ||  || ||||||||||||| |||||    
T  6631796 agctatagtatcactagcctcaaatgcaagtagtatgattatgagtattgaaaattttaagctaattgaatttggaactgtcattgttgtatgcgcaatg 6631697  T
Q  181 ccta 184  Q
    ||||    
T  6631696 ccta 6631693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 384
Target Start/End: Complemental strand, 31117579 - 31117536
Alignment:
Q  341 tttgttcattgacttttctcattttagtcagcaagaataaattg 384  Q
    |||||||| ||| |||| ||||||||||||||||||||||||||    
T  31117579 tttgttcaatgatttttgtcattttagtcagcaagaataaattg 31117536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 243
Target Start/End: Original strand, 17374052 - 17374176
Alignment:
Q  119 ttaggagaatcgaaaattttaaggtcgttggattttgagttgccattgttgtatgcacaatgcctatta-accgtacaacaatcttaatttatagaacat 217  Q
    ||||||| ||||||||||| |||||  ||| | || ||  |||||||||||||||||| ||||| |  | |||  ||| |||||||||||||||||||||    
T  17374052 ttaggagtatcgaaaatttgaaggtaattgtacttggaactgccattgttgtatgcaccatgccaacaagacc--acatcaatcttaatttatagaacat 17374149  T
Q  218 tcaac-aaaggaaattatttgcaaatt 243  Q
    | ||| ||||||||| |||||||||||    
T  17374150 taaacaaaaggaaatgatttgcaaatt 17374176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 7110483 - 7110528
Alignment:
Q  337 gggatttgttcattgacttttctcattttagtcagcaagaataaat 382  Q
    |||||||||||||||| | || ||||||| ||||||||||||||||    
T  7110483 gggatttgttcattgaatattttcattttggtcagcaagaataaat 7110528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 350 - 431
Target Start/End: Original strand, 596738 - 596819
Alignment:
Q  350 tgacttttctcattttagtcagcaagaataaattgacttaattttgagcaaaaacatttgaattatttcccattttgtgata 431  Q
    |||||||||||||||| |||  ||||||||||||| |||||||  || ||||   |||||| ||||||||||||||| ||||    
T  596738 tgacttttctcattttggtccccaagaataaattggcttaattaagaacaaactaatttgatttatttcccattttgcgata 596819  T

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