View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3267_low_8 (Length: 442)
Name: NF3267_low_8
Description: NF3267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3267_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 13 - 428
Target Start/End: Complemental strand, 49279588 - 49279173
Alignment:
| Q |
13 |
gagactgaacgagctagagcaatatttgagtctgtaattgctcgaccagagcctgagttgttatggaaggcattccttgattttgagactgctaagattg |
112 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49279588 |
gagactgaacgagctagagcaatatttgagtctgcaattgctcgaccagagcatgagttgttatggaaggcattccttgattttgagactgctaagattg |
49279489 |
T |
|
| Q |
113 |
aatttgagagaacaagagtgcattatgaaagaattcctaataggaaaaagcagcacttggagatatggataagctatgcagagtttgaagcaacagctac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49279488 |
aatttgagagaacaagagtgcattatgaaagaattcctaataggaaaaagcagcacttggagatatggataagctatgcagagtttgaagcaacagctac |
49279389 |
T |
|
| Q |
213 |
ttataaggcgggtttagaacaaaagaagcaatgcattgagcatgccagaagggtgtttgaggaagctctgagttacatcacatcatcagctccagattca |
312 |
Q |
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| T |
49279388 |
ttataaggcgggtttagaacaaaagaaacaatgcattgagcatgccagaagggtgtttgaggaagctgtgagttacatcacatcatcagctccagattca |
49279289 |
T |
|
| Q |
313 |
agagaagaaagggcgatgtttttggtgaaatggctcaacttggaggctttctctggagagttgggtgatgttagcttagtcctgcctaagctgcccaaga |
412 |
Q |
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| T |
49279288 |
agagaagaaagggcgatgcttttggtgaaatggctcaacttggaggctttctctggagagttgggtgatgttagcttagtcctgcctaagctgcccaaga |
49279189 |
T |
|
| Q |
413 |
agcgacagaagagact |
428 |
Q |
| |
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| T |
49279188 |
agcgacagaagagact |
49279173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 11 - 424
Target Start/End: Complemental strand, 49276033 - 49275611
Alignment:
| Q |
11 |
cagagactgaacgagctagagcaatatttgagtctgtaattgctcgaccaga---------gcctgagttgttatggaaggcattccttgattttgagac |
101 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||| ||||||||||||| |||||||||||| |
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| T |
49276033 |
cagagactgaacgagctagagcaatatttgagtctgcaattgctcgaccagaattggtaaagcaagagttgttttggaaggcattccatgattttgagac |
49275934 |
T |
|
| Q |
102 |
tgctaagattgaatttgagagaacaagagtgcattatgaaagaattcctaataggaaaaagcagcacttggagatatggataagctatgcagagtttgaa |
201 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49275933 |
tgctaagtgtgaatttgagagaacaagagtgcattatgaaagaattcctaatcgtaaaaagcagcacttggagatatggataagctatgcagagtttgaa |
49275834 |
T |
|
| Q |
202 |
gcaacagctacttataaggcgggtttagaacaaaagaagcaatgcattgagcatgccagaagggtgtttgaggaagctctgagttacatcacatcatcag |
301 |
Q |
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| T |
49275833 |
gcaacagctacttataaagcgggtttagaacaaaagaagcaatgcattgagcatgccagaagggtgtttgaggaagctgtgagttacatcacatcatcag |
49275734 |
T |
|
| Q |
302 |
ctccagattcaagagaagaaagggcgatgtttttggtgaaatggctcaacttggaggctttctctggagagttgggtgatgttagcttagtcctgcctaa |
401 |
Q |
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| T |
49275733 |
ctccagattcaagagaagaaagggcgatgcttttggtgaaatggcttaacttggaggcttcatctggagagttgggtgatgttagcttggtcctgcctaa |
49275634 |
T |
|
| Q |
402 |
gctgcccaagaagcgacagaaga |
424 |
Q |
| |
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|||||||||||||| |||||||| |
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| T |
49275633 |
gctgcccaagaagcaacagaaga |
49275611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 264 - 415
Target Start/End: Original strand, 34790461 - 34790612
Alignment:
| Q |
264 |
ggtgtttgaggaagctctgagttacatcacatcatcagctccagattcaagagaagaaagggcgatgtttttggtgaaatggctcaacttggaggctttc |
363 |
Q |
| |
|
|||||||||||| ||||| | || ||| ||||||||||||| || || |||||||||||| ||| | |||| ||||||||||||||||||||||| |
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| T |
34790461 |
ggtgtttgaggatgctctaaaccacttcagatcatcagctccaattttaaaagaagaaagggcaatgctattggagaaatggctcaacttggaggcttca |
34790560 |
T |
|
| Q |
364 |
tctggagagttgggtgatgttagcttagtcctgcctaagctgcccaagaagc |
415 |
Q |
| |
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||||| ||| | |||||||| |||||||||| | |||||||||||||||||| |
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| T |
34790561 |
tctggggagctaggtgatgtcagcttagtccagtctaagctgcccaagaagc |
34790612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 80 - 211
Target Start/End: Original strand, 34790146 - 34790274
Alignment:
| Q |
80 |
aggcattccttgattttgagactgctaagattgaatttgagagaacaagagtgcattatgaaagaattcctaataggaaaaagcagcacttggagatatg |
179 |
Q |
| |
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|||||| | |||||||||| |||| | || ||||||||||||| ||||||||| ||||||||| ||| | || | | |||||| |||| || |||| |
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| T |
34790146 |
aggcatacgttgattttgaaactgttgagtgtgaatttgagagagcaagagtgctttatgaaaggcttcttgatcgaacaaagca---cttgaaggtatg |
34790242 |
T |
|
| Q |
180 |
gataagctatgcagagtttgaagcaacagcta |
211 |
Q |
| |
|
||| |||||||||||||||||||||||||||| |
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| T |
34790243 |
gatgagctatgcagagtttgaagcaacagcta |
34790274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 264 - 415
Target Start/End: Complemental strand, 2288312 - 2288161
Alignment:
| Q |
264 |
ggtgtttgaggaagctctgagttacatcacatcatcagctccagattcaagagaagaaagggcgatgtttttggtgaaatggctcaacttggaggctttc |
363 |
Q |
| |
|
|||||||||||| ||||| | || ||| |||||||||||| |||| || |||||||||||| ||| | || | ||||||||||||||||||||||| |
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| T |
2288312 |
ggtgtttgaggatgctctaaaccacttcagatcatcagctccggatttaaaagaagaaagggcaatgctattagagaaatggctcaacttggaggcttca |
2288213 |
T |
|
| Q |
364 |
tctggagagttgggtgatgttagcttagtcctgcctaagctgcccaagaagc |
415 |
Q |
| |
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||||| ||| | |||||||| |||||||||| | |||||||||||||||||| |
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| T |
2288212 |
tctggggagctaggtgatgtcagcttagtccagtctaagctgcccaagaagc |
2288161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 42
Target Start/End: Complemental strand, 2289046 - 2289017
Alignment:
| Q |
13 |
gagactgaacgagctagagcaatatttgag |
42 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
2289046 |
gagactgaacgagctagagcaatatttgag |
2289017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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