View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3267_low_9 (Length: 440)
Name: NF3267_low_9
Description: NF3267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3267_low_9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Original strand, 42621748 - 42622183
Alignment:
| Q |
1 |
attcaaaataaccaaggtacatccctaaaggaatatggcattcgactcgtataattaatatgaagtatagaataaattcacacaaaaaaccaaaggggtt |
100 |
Q |
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| T |
42621748 |
attcaaaataatcaaggtatatccctaaaggaatatggcattcgactcgtataattaatatgaagcatagaataaattcacacaaaaaaccaaaggggtt |
42621847 |
T |
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| Q |
101 |
tgatgaatattaaaattgggaatggtccacgtgataaagtgaggtattgccattgatatactcgataaaaagtcaatcagtaggctatgttgggcgaaac |
200 |
Q |
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| T |
42621848 |
tgatgaatatcaaaattgggaatggtccacgtgataaagtgaggtattgccattgatatactcgataaaaagtcaatcagtaggctatgttgggcgaaac |
42621947 |
T |
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| Q |
201 |
gttggaagtacgtaggttggggtaatttgaagtgtctgtgtcttgtactcatcattagcatgataccaaaacttggcaacaatttttgccatttataact |
300 |
Q |
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| T |
42621948 |
gttggaagta----ggttggggtaatttgaagtgtctgtgtcttgtactcatcattagcatgataccaaaacttggcaacaatttttgccatttataact |
42622043 |
T |
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| Q |
301 |
gttgtccactacagaaactgacctctgctaactcaatgatctatatggacctatttcaagttgctgtgacatattgaaaacattctcaacgcattttgaa |
400 |
Q |
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||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42622044 |
gttgtccactaaagaaactgaactctgctaactcaatgatctatatggacctgtttcaagttgctgtgacatattgaaaacattctcaacgcattttgaa |
42622143 |
T |
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| Q |
401 |
ctaatcaacgctcgatggcttagtcacagttaaatttctt |
440 |
Q |
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| T |
42622144 |
ctaatcaacgctcgatggcttagtcacagttaaatttctt |
42622183 |
T |
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